3.5.3

• matplotlib version pin has been removed, some colormap changes in cm.py for newer version. Some plotting differences might occur
• dependencies and metadata are defined in the toml file (setup.py & requirements deprecated)
• scripts / entrypoints are defined here as well (bin folder deprecated)
• wheels are built with setuptools / toml file now (python >= 3.7)
• deeptools' version is defined in the toml file as well (no more _version.py, keep importlib as a requirement until we drop python 3.7 support). --version flags have been changed to use importlib in all executables.
• usage standardized per executable
• nosetests are deprecated and ported to pytests
• pytests now run on proposed wheel with version 3.7 - 3.11
• dependency on the custom typescript action (https://github.com/deeptools/github-actions) has been deprecated in favor of micromamba/python/miniconda-setup actions
• planemo tests and pytests use conda environment(.github/test_and_build.yml), historical 'foo' name is dropped.
• planemo tests expected pngs are slightly changed (due to mpl updates) expected qual metrics in plotfingerprint changed, not 100% where exactly the rounding difference comes from
• planemo tests run on galaxy 23.1
• stricter label checks and validator in galaxy wrapper
• deprecation of np types for builtin types