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  1. streammd streammd Public

    Single-pass probabilistic duplicate marking of alignments with a Bloom filter.

    C++ 23 2

  2. qasim qasim Public

    Simulate mutations, fragment generation and paired-end HTS reads on diploid genomes

    Python 2

  3. gen3-mcp gen3-mcp Public

    A Model Context Protocol (MCP) server for interacting with Gen3 data commons.

    Python 4

  4. AdamaJava/adamajava AdamaJava/adamajava Public

    Java 17 5

  5. broadinstitute/cromwell broadinstitute/cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 1k 373

  6. GUARDIANS-infrastructure/rems-co GUARDIANS-infrastructure/rems-co Public

    Service to push config and entitlements from REMS to COmanage

    Python 2