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data frame #1

Merged
merged 2 commits into from
Oct 7, 2012
Merged

data frame #1

merged 2 commits into from
Oct 7, 2012

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dengemann added a commit that referenced this pull request Oct 7, 2012
merging data frame edits, thanks
@dengemann dengemann merged commit 185e1f8 into dengemann:data_frame Oct 7, 2012
dengemann added a commit that referenced this pull request Oct 8, 2012
…xisting plus modified data

- use case #1 mixing of ica denoised data
- use case #2 other filtering operations
- use case #3 'ABC' for reading in externally processed data

I added assert statement that makes sure the dimensionality of the external data and the original fiff is compatible.

What do you think on this?
dengemann pushed a commit that referenced this pull request Feb 5, 2014
dengemann pushed a commit that referenced this pull request Feb 13, 2014
dengemann pushed a commit that referenced this pull request May 2, 2014
dengemann pushed a commit that referenced this pull request Jul 13, 2015
dengemann pushed a commit that referenced this pull request Nov 11, 2015
EDF: allow marking of pause on/off events (bit 17)
dengemann pushed a commit that referenced this pull request Nov 30, 2015
Updating the Advanced Installation page
dengemann pushed a commit that referenced this pull request Nov 16, 2019
* add info / refs on limo dataset

add sklearn regression

add class linear regression

update limo doc

fix limo fetcher docstring

fix merging issues

* FIX: Indentation

* FIX: A couple more

* STY: Nitpicks [ci skip]

* ENH: Links

* Apply suggestions from code review

add jonas suggestions

Co-Authored-By: jona-sassenhagen <jona.sassenhagen@gmail.com>

* fix syntax + remaining issues

* tighten up prose and code (#1)

* drop class approach / add LIMO_PATH to config

* Apply suggestions from code review

Co-Authored-By: Daniel McCloy <dan.mccloy@gmail.com>
dengemann pushed a commit that referenced this pull request Feb 17, 2023
* start abstraction of Browser-Classes

* outline of data-management-class

* wip refactoring MNEBrowserFigure

* refactored Browser-Initialization into MNEDataBrowser

* fix some style-issues and remove remnants

* start with integration of pyqtgraph-prototype

* make pyqtgraph optional (just for development, can be removed again for final PR)

* more refactoring of mpl-methods into BrowserBase

* fixes for failing tests

* add docstrings in _browser.py

* move _update_projector-call into BrowserBase

* add use/set/get for browser

* rename 2D to Browser to avoid confusion

* move inheritance of BrowserBaser from MNEFigure to MNEBrowseFigure

* refactored _annotation_helper from test_raw.py

* fix flake

* move base-classes/funcs from _browser.py back to _figure.py to facilitate review

* update from upstream

* remove set/get/use-browser from __init__.py again to prevent make docstring from failing

* add show_browser and other adjustments for pyqtgraph

* refactoring _close into BrowserBase

* add block for pyqtgraph

* [revert for PR] adjust plot-function to accept kwargs from benchmark

* fix annotation-key still working when plotting epochs

* add docstring to show_browser

* refactor midpoints into BrowserBase for epochs

* add show to show_broser

* add pyqtgraph to browse_backend-fixture

* fix block not supported in Figure.show()

* WIP adapt test_raw.test_plot_raw_traces

* adapt test_plot_raw_traces to make it work for matplotlib and pyqtgraph

* refactor _redraw

* refactor _update_data

* change bad-color from rgb to hex

* pyqtgraph always blocks execution

* reinsert block for pyqtgraph

* make _redraw not abstract anymore (not needed for pyqtgraph)

* add pyqtgraph-backend

* fix butterfly-bug showing channels still in old y-position [ci skip]

* rebase on main [ci skip]

* Set usage of OpenGL to false by default

* organize keyboard-shortcuts [ci skip]

* clarify index-system for traces and set z-values for traces and annotations [ci skip]

* add exception-hook from pytest-qt [ci skip]

* actually raise exceptions from qt [ci skip]

* fix bugs annotations (removing decription/select visible) [ci skip]

* reorganize imports [ci skip]

* fix bug _update_regions_colors [ci skip]

* add '=' to keyboard-shortcuts and make scale-steps smaller [ci skip]

* import pg-backend from separate repo[ci skip]

* remove pg-backend from PR[ci skip]

* update repo-link to mne-tools[ci skip]

* Update mne/viz/_figure.py

Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>

* remove _pg_figure from _backends[ci skip]

* add browser-backend-functions to documentation[ci skip]

* avoid codespell-failure [ci skip]

* remove pyqtgraph from tests (tests will be run in mne-qt-browser for now)

* update parameters for Raw.plot()

* fix flake

* fix pip install link

* fix table in set_browser_backend

* fix butterfly showing always all channels despite of selection

* adjust test_scale_bar for pyqtgraph [ci skip]

* refactor channel context figs [ci skip]

* change to relative imports [ci skip]

* refactor _new_child_figure [ci skip]

* update some key-presses [ci skip]

* adapt test_plot_raw_ssp_interaction to pyqtgraph [ci skip]

* adapt test_plot_raw_child_figures to pyqtgraph [ci skip]

* change default of event_lines to list [ci skip]

* add drag to _fake_click [ci skip]

* adapt test_annotations to pyqtgraph [ci skip]

* adapt test_clock_xticks to pyqtgraph [ci skip]

* remove install-question [ci skip]

* adapt pyqtgraph-backend to test_plot_raw_selection [ci skip]

* adapt pyqtgraph-backend to test_min_window_size [ci skip]

* adapt pyqtgraph-backend to test_plot_raw_groupby [ci skip]

* fix multiple tests [ci skip]

* adapt annotation-test for pyqtgraph [ci skip]

* fix more test-issues [ci skip]

* add pyqtgraph to test_raw-suite [ci skip]

* fix flake

* update feature-grid

* update from main branch

* fix checkbox-click issue (inconsistent across OS)

* fix test_plot_raw_ssp_interaction for linux

* update from upstream2

* fix flake

* simplify ssp_interaction

* fix test_min_window_size for Windows-CI

* fix flake

* implement review-feedback #1

* fix _proj_click_all for inconsistent fake-click-behaviour

* clarify docs for preload

* fix flake

* [Refactor]: browser_backend-fixture for consistency

* DOC: Add doc comments for block

* add speed test

* rename preload to precompute

* fix unused import

* remove unnecessary parameters

* remove speed-test

* remove automatic installation of mne-qt-browser

* revert removal of automatic installation until mne-qt-browser is uploaded to PyPi

* FIX: Route through call

* add mne-qt-browser to requirements.txt

* update latest.inc

* fix flake

* fix latest.inc

* update test-dependencies

* specify docs regarding block-behaviour

* fix typo in github_actions_dependencies.sh

* fix docstring for plot_raw

* fix docstring for plot_raw again

* fix docstring for plot_raw

* add mne-qt-browser to azure_dependencies.sh

* add mne-qt-browser to environment.yml

* specify latest.inc

* specifiy use_opengl documentation

* Update mne/viz/_figure.py

Co-authored-by: Eric Larson <larson.eric.d@gmail.com>

* FIX: Fix test [skip azp] [skip circle]

* FIX: Path [skip azp] [skip circle]

* revert color-name-changes

* MAINT: Test only on one run

* FIX: Remove

* MNT: Add to mne sys_info

* DOC: Fix doc build

* FIX: Better

* DOC: Add link to mne-qt-browser issues in docs

* Update mne/utils/docs.py

Co-authored-by: Daniel McCloy <dan@mccloy.info>

* Update mne/utils/docs.py

Co-authored-by: Daniel McCloy <dan@mccloy.info>

* Update mne/viz/raw.py

Co-authored-by: Daniel McCloy <dan@mccloy.info>

* FIX: fix flake

* FIX: Test

* FIX: Correct check

* STY: Flake

* FIX: One more mark

Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
Co-authored-by: Daniel McCloy <dan@mccloy.info>
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2 participants