Merge branch 'release/3.2.0'

dermatologist · Nov 20, 2023 · 3fcc84a · 3fcc84a
2 parents 7de89d4 + 3f224ad
commit 3fcc84a
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Showing 11 changed files with 38 additions and 28 deletions.
diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
@@ -24,7 +24,7 @@ jobs:
         make -C docs/ html
         cp docs/_config.yml docs/_build/html/_config.yml
     - name: Deploy Docs 🚀
-      uses: JamesIves/github-pages-deploy-action@v4.2.5
+      uses: JamesIves/github-pages-deploy-action@v4
       with:
         branch: gh-pages # The branch the action should deploy to.
         folder: docs/_build/html # The folder the action should deploy.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,8 +1,8 @@
 # Changelog
 
-## [Unreleased](https://github.com/dermatologist/fhiry/tree/HEAD)
+## [3.1.0](https://github.com/dermatologist/fhiry/tree/3.1.0) (2023-11-14)
 
-[Full Changelog](https://github.com/dermatologist/fhiry/compare/3.0.0...HEAD)
+[Full Changelog](https://github.com/dermatologist/fhiry/compare/3.0.0...3.1.0)
 
 **Implemented enhancements:**
 

diff --git a/dev-requirements.txt b/dev-requirements.txt
@@ -12,7 +12,7 @@ babel==2.9.1
     # via sphinx
 backports-entry-points-selectable==1.1.0
     # via virtualenv
-certifi==2023.7.22
+certifi==2023.11.17
     # via
     #   -c requirements.txt
     #   requests

diff --git a/docs/authors.md b/docs/authors.md
diff --git a/docs/authors.md b/docs/authors.md
@@ -0,0 +1,4 @@
+```{include} ../AUTHORS.md
+:relative-docs: docs/
+:relative-images:
+```
diff --git a/docs/changelog.md b/docs/changelog.md
diff --git a/docs/changelog.md b/docs/changelog.md
@@ -0,0 +1,4 @@
+```{include} ../CHANGELOG.md
+:relative-docs: docs/
+:relative-images:
+```
diff --git a/docs/contributing.md b/docs/contributing.md
@@ -0,0 +1,4 @@
+```{include} ../CONTRIBUTING.md
+:relative-docs: docs/
+:relative-images:
+```
diff --git a/docs/index.md b/docs/index.md
@@ -3,24 +3,17 @@
 FHIR to pandas.dataframe for AI and ML
 
 
-## Note
-
-> This is the main page of your project's [Sphinx] documentation. It is
-> formatted in [Markdown]. Add additional pages by creating md-files in
-> `docs` or rst-files (formated in [reStructuredText]) and adding links to
-> them in the `Contents` section below.
->
-> Please check [Sphinx], [recommonmark] and [autostructify] for more information
-> about how to document your project and how to configure your preferences.
-
-
 ## Contents
 
-* [Overview](readme)
-* [License](license)
-* [Authors](authors)
-* [Changelog](changelog)
-* [Module Reference](api/modules)
+```{toctree}
+:maxdepth: 2
+
+Overview <readme>
+Module Reference <api/modules>
+Contributions & Help <contributing>
+License <license>
+Authors <authors>
+Changelog <changelog>
 
 
 ## Indices and tables

diff --git a/docs/license.md b/docs/license.md
@@ -0,0 +1,5 @@
+# License
+
+```{literalinclude} ../LICENSE.txt
+:language: text
+```
diff --git a/docs/readme.md b/docs/readme.md
diff --git a/docs/readme.md b/docs/readme.md
@@ -0,0 +1,4 @@
+```{include} ../README.md
+:relative-docs: docs/
+:relative-images:
+```
diff --git a/requirements.txt b/requirements.txt
@@ -6,7 +6,7 @@
 #
 cachetools==5.3.2
     # via google-auth
-certifi==2023.7.22
+certifi==2023.11.17
     # via requests
 charset-normalizer==3.3.2
     # via requests
@@ -33,12 +33,12 @@ googleapis-common-protos==1.61.0
     # via
     #   google-api-core
     #   grpcio-status
-grpcio==1.59.2
+grpcio==1.59.3
     # via
     #   google-api-core
     #   google-cloud-bigquery
     #   grpcio-status
-grpcio-status==1.59.2
+grpcio-status==1.59.3
     # via google-api-core
 idna==3.4
     # via requests
@@ -57,7 +57,7 @@ pandas==2.1.3
     #   fhiry (setup.py)
 proto-plus==1.22.3
     # via google-cloud-bigquery
-protobuf==4.25.0
+protobuf==4.25.1
     # via
     #   google-api-core
     #   google-cloud-bigquery

diff --git a/setup.cfg b/setup.cfg
@@ -92,7 +92,6 @@ testing =
 # CAUTION: --cov flags may prohibit setting breakpoints while debugging.
 #          Comment those flags to avoid this py.test issue.
 addopts =
-    --cov fhiry --cov-report term-missing
     --verbose
 norecursedirs =
     dist