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Pull requests: dib-lab/genome-grist

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Pull requests list

WIP: Use sourmash_plugin_branchwater
#314 opened Nov 11, 2024 by ctb Loading…
2 tasks
WIP: update genome-grist to modern days (Sep 2024)
#313 opened Sep 18, 2024 by ctb Loading…
Update pytest requirement from <7.5.0,>=5.1.2 to >=5.1.2,<8.1.0 dependencies Pull requests that update a dependency file python Pull requests that update Python code
#310 opened Jan 29, 2024 by dependabot bot Loading…
Bump actions/cache from 3 to 4 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#309 opened Jan 18, 2024 by dependabot bot Loading…
Bump lxml from 4.9.3 to 5.1.0 dependencies Pull requests that update a dependency file python Pull requests that update Python code
#308 opened Jan 9, 2024 by dependabot bot Loading…
Bump pytest-dependency from 0.5.1 to 0.6.0 dependencies Pull requests that update a dependency file python Pull requests that update Python code
#305 opened Jan 1, 2024 by dependabot bot Loading…
Bump actions/setup-python from 4 to 5 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#303 opened Dec 7, 2023 by dependabot bot Loading…
Bump conda-incubator/setup-miniconda from 2 to 3 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#302 opened Nov 28, 2023 by dependabot bot Loading…
Bump snakemake from 7.25.0 to 7.30.1 dependencies Pull requests that update a dependency file python Pull requests that update Python code
#290 opened Jun 29, 2023 by dependabot bot Loading…
1
[WIP] Interactive plots for Taxonomy report
#185 opened Mar 12, 2022 by mr-eyes Loading…
1
[WIP] add parsing code for notebooks into the genome_grist package
#176 opened Feb 19, 2022 by ctb Loading…
[WIP] add rules for protein mapping
#159 opened Feb 10, 2022 by bluegenes Loading…
5 tasks
1
[WIP] explore all overlapping genomes, not just minimum metagenome cover
#124 opened Dec 21, 2021 by ctb Loading…
2 tasks
update reporting notebook
#34 opened Dec 19, 2020 by ctb Loading…
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