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Merge branch 'master' of github.com:ged-lab/khmer into oxli/initial
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ctb committed May 20, 2015
2 parents fd8e1e9 + c8aa588 commit ae9d085
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2 changes: 2 additions & 0 deletions .gitignore
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Expand Up @@ -21,6 +21,8 @@ doc/_build
coverage.xml
coverage-gcovr.xml
coverage-debug
htmlcov/
diff-cover.html
khmer-cov.tgz
cppcheck-result.xml
MANIFEST
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8 changes: 7 additions & 1 deletion ChangeLog
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@@ -1,10 +1,16 @@
2015-05-19 Jacob Fenton <bocajnotnef@gmail.com>
2015-05-20 Jacob Fenton <bocajnotnef@gmail.com>

* oxli/{__init__,khmer_api,common}.py,scripts/build-graph.py,
tests/test_scripts.py: added oxli module, oxlified load_graph script, tests
* scripts/load-graph.py: replaced with oxlified version
* setup.py: added oxli module and entry point

2015-05-20 Kevin Murray <spam@kdmurray.id.au>

* .gitignore: Add htmlcov/ and diff-cover.html to gitignore
* Makefile: Use rm -f to remove files to quash error messages on
non-existant files

2015-05-18 Sherine Awad <sherine.awad@gmail.com>

* tests/test_scripts.py: Test loading of compressed counting table
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9 changes: 5 additions & 4 deletions Makefile
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Expand Up @@ -63,11 +63,12 @@ dist/khmer-$(VERSION).tar.gz: $(SOURCES)
clean: FORCE
cd lib && ${MAKE} clean || true
cd tests && rm -rf khmertest_* || true
rm -f khmer/_khmermodule.so || true
rm khmer/*.pyc lib/*.pyc || true
rm -f khmer/_khmermodule.so
rm -f khmer/*.pyc lib/*.pyc
./setup.py clean --all || true
rm coverage-debug || true
rm -Rf .coverage || true
rm -f coverage-debug
rm -Rf .coverage
rm -f diff-cover.html

debug: FORCE
export CFLAGS="-pg -fprofile-arcs"; python setup.py build_ext --debug \
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