Remove some scripts/

[ctb]

ec.py, edit-kmers.py, diginorm-correct.py,normalize-by-kadian.py,

Also, document and test count-median.py.

[ctb]

Actually, let's leave ec.py -- it should just be moved to sandbox/ or tested/documented, I think. @fishjord, are you using ec.py?

[fishjord]

As a reference of what the EC strategy is kinda suppose to work like.
Ideally instead of convoluted logic about whether gaps are in the
beginning or end of the alignment I'm planning on using the truncated
alignment flag that the new read aligner returns as part of the Alignment
object

On Sun, Sep 1, 2013 at 8:01 PM, C. Titus Brown notifications@github.comwrote:

Actually, let's leave ec.py -- it should just be moved to sandbox/ or
tested/documented, I think. @fishjord https://github.com/fishjord, are
you using ec.py?

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/134#issuecomment-23635901
.

[ctb]

OK. We can leave ec.py in then ;)

[fishjord]

All for moving it to sandbox though!

On Sun, Sep 1, 2013 at 9:57 PM, C. Titus Brown notifications@github.comwrote:

OK. We can leave ec.py in then ;)

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Reply to this email directly or view it on GitHubhttps://github.com//issues/134#issuecomment-23637826
.

[ctb]

done.

On Sun, Sep 01, 2013 at 06:45:18PM -0700, fishjord wrote:

As a reference of what the EC strategy is kinda suppose to work like.
Ideally instead of convoluted logic about whether gaps are in the
beginning or end of the alignment I'm planning on using the truncated
alignment flag that the new read aligner returns as part of the Alignment
object

On Sun, Sep 1, 2013 at 8:01 PM, C. Titus Brown notifications@github.comwrote:

Actually, let's leave ec.py -- it should just be moved to sandbox/ or
tested/documented, I think. @fishjord https://github.com/fishjord, are
you using ec.py?

???
Reply to this email directly or view it on GitHubhttps://github.com//issues/134#issuecomment-23635901
.

---

Reply to this email directly or view it on GitHub:
#134 (comment)

C. Titus Brown, ctb@msu.edu

[mr-c]

Has this been merged yet?

[ctb]

No; see #149

[mr-c]

Done :-)