provide a Python function to return tags that are present in a sequence

[ctb]

Right now there is no way, in Python, to figure out which k-mers in a given sequence are tagged! More generally, it would be nice to be able to iterate over all tags in the tagset.

[mr-c]

@camillescott Does #164 / #216 provide a Python function to return tags that are present in a sequence?

[camillescott]

Yes; the function is exposed through LabelHash in python, and actually
defined in Subset. This may be promoted up to Hashbits. You can use
sweep_tag_neighborhood with range of 0 to check only the kmers in the
sequence (the default range is 0).

On Thu, Jan 16, 2014 at 2:21 PM, Michael R. Crusoe <notifications@github.com

wrote:

@camillescott https://github.com/camillescott Does #164#164
#216 #216 provide a Python
function to return tags that are present in a sequence?

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Reply to this email directly or view it on GitHubhttps://github.com//issues/62#issuecomment-32519867
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Camille Scott

Department of Computer Science and Engineering
Lab for Genomics, Evolution, and Development
Michigan State University

camille.scott.w@gmail.com