Determine sequence format by sniffing, not by filename extension

[ctb]

FASTA/FASTQ -- this gets annoying when diginorm produces .keep files that are determined to be fasta, despite actually being fastq.

[mr-c]

Isn't this a dupe?

[ctb]

Perhaps. Which issue? It may have crept in with the new C++ sequence
parsing. Either way, we should have tests to explicitly address.

On Sun, Jul 07, 2013 at 12:34:06AM -0700, mr-c wrote:

Isn't this a dupe?

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Reply to this email directly or view it on GitHub:
#77 (comment)

C. Titus Brown, ctb@msu.edu

[mr-c]

Issue #68 is for a standalone tool to do the same

On Sun, Jul 7, 2013 at 10:20 AM, C. Titus Brown notifications@github.comwrote:

Perhaps. Which issue? It may have crept in with the new C++ sequence
parsing. Either way, we should have tests to explicitly address.

On Sun, Jul 07, 2013 at 12:34:06AM -0700, mr-c wrote:

Isn't this a dupe?

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Reply to this email directly or view it on GitHub:
#77 (comment)

C. Titus Brown, ctb@msu.edu

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/77#issuecomment-20571316
.

[ctb]

This seems like a largely different issue to me, no? Command line tool vs built-in library functions.

[mr-c]

Fixed by #642 / #643