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Rename _screed_record_dict calls in khmer #1066

Merged
merged 13 commits into from
Jun 12, 2015
Merged

Rename _screed_record_dict calls in khmer #1066

merged 13 commits into from
Jun 12, 2015

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ctb
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@ctb ctb commented Jun 6, 2015

Fix issue #767; taken over from #956.

Added support for changes in screed - need to have correct screed version in order to work
Passes test when specifying the screed version.

  • Is it mergeable?
  • Did it pass the tests?
  • If it introduces new functionality in scripts/ is it tested?
    Check for code coverage with make clean diff-cover
  • Is it well formatted? Look at make pep8, make diff_pylint_report,
    make cppcheck, and make doc output. Use make format and manual
    fixing as needed.
  • Did it change the command-line interface? Only additions are allowed
    without a major version increment. Changing file formats also requires a
    major version number increment.
  • Is it documented in the ChangeLog?
    http://en.wikipedia.org/wiki/Changelog#Format
  • Was a spellchecker run on the source code and documentation after
    changes were made?
  • Is the Copyright year up to date?

Conflicts:
	ChangeLog
	scripts/trim-low-abund.py
@ctb
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ctb commented Jun 6, 2015

Needs to wait for the next release of screed, sadly.

@ctb ctb added this to the 2.0 milestone Jun 6, 2015
@luizirber
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I'm taking over this and bringing #1045 changes too.

(#1045 did this change, but there other fixes needed for screed 0.9)

@luizirber
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OK, at this point both me and Titus touched the PR, so ready for review and merge @mr-c @camillescott

@mr-c
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mr-c commented Jun 12, 2015

LGTM, thanks!

mr-c added a commit that referenced this pull request Jun 12, 2015
Rename _screed_record_dict calls in khmer
@mr-c mr-c merged commit 024ea89 into master Jun 12, 2015
@mr-c mr-c deleted the fix/767 branch June 12, 2015 17:49
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4 participants