FIX Stan models compilation, FIX channel priority

dieterich-lab · Feb 13, 2023 · 91dbe33 · 91dbe33
1 parent 9f6ec64
commit 91dbe33
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Showing 4 changed files with 2 additions and 4 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -28,7 +28,7 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
           channels: bioconda,conda-forge,defaults
-          channel-priority: true
+          channel-priority: strict
           auto-update-conda: true
           auto-activate-base: false
           activate-environment: rpbp

diff --git a/src/rpbp/defaults.py b/src/rpbp/defaults.py
@@ -89,7 +89,7 @@
 # Stan model instantiation
 # Stan's multi-threaded processing is based on the Intel Threading Building Blocks (TBB) library,
 # which must be linked to by the C++ compiler. True uses cpp_options={'STAN_THREADS': 'TRUE'}, or False.
-model_inst_options = {"stan_threads": True}
+model_inst_options = {"stan_threads": False}
 
 # shared options
 mcmc_shared = {

diff --git a/src/rpbp/orf_profile_construction/create_orf_profiles.py b/src/rpbp/orf_profile_construction/create_orf_profiles.py
@@ -31,7 +31,6 @@
     default_num_cpus,
     default_mem,
     star_executable,
-    model_inst_options,
     metagene_options,
 )
 

diff --git a/src/rpbp/translation_prediction/predict_translated_orfs.py b/src/rpbp/translation_prediction/predict_translated_orfs.py
@@ -16,7 +16,6 @@
 from rpbp.defaults import (
     default_num_cpus,
     translation_options,
-    model_inst_options,
     metagene_options,
 )