Fixing old numpy does not pow issue (use power instead)
#58
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macos-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck, any::rpymat, any::reticulate | |
| needs: check | |
| - name: Get conda path | |
| id: get-conda-path | |
| run: | | |
| path <- rpymat:::install_root() | |
| cat(sprintf("path=%s\n", path), file = Sys.getenv("GITHUB_OUTPUT")) | |
| shell: Rscript {0} | |
| - name: Get conda cache key | |
| id: get-conda-cache-key | |
| run: | | |
| echo key=1 >> $GITHUB_OUTPUT | |
| - name: Restore ANTsPy | |
| id: restore-conda-cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| ${{ steps.get-conda-path.outputs.path }} | |
| key: ${{ runner.os }}-conda-${{ steps.get-conda-cache-key.outputs.key }} | |
| restore-keys: | | |
| ${{ runner.os }}-conda- | |
| - name: Install ANTsPy | |
| run: | | |
| python_ver <- "3.9" | |
| verbose <- TRUE | |
| # Install conda and create a conda environment | |
| if(!dir.exists(rpymat::env_path())) { | |
| standalone <- !file.exists(rpymat::conda_bin()) | |
| rpymat::configure_conda(python_ver = python_ver, force = TRUE, standalone = standalone) | |
| } | |
| rpymat::ensure_rpymat(verbose = verbose) | |
| installed_pkgs_tbl <- rpymat::list_pkgs() | |
| # install necessary libraries | |
| pkgs <- c("h5py", "numpy", "scipy", "pandas", "cython") | |
| if(!all(pkgs %in% installed_pkgs_tbl$package)) { | |
| rpymat::add_packages(pkgs) | |
| } | |
| # install antspyx family | |
| if(!"antspyx" %in% installed_pkgs_tbl$package) { | |
| rpymat::add_packages(packages = "antspyx", pip = TRUE) | |
| } | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |