v1.3.0

1.3.0 (2024-02-14)

Features

• add gfold_0_01 cutoff specification via config.yaml (28bda66)
• add gseapy gene set enrichment (dryrun working, not tested otherwise) (1600242)
• add gseapy gene set enrichment (dryrun working, not tested otherwise) (9fadae7)

Bug Fixes

• add permissions for release-please (96fc94f)
• add permissions for release-please (012e2ce)
• gseapy.rst with correct wildcards and setup (24680d4)
• gseapy.rst with correct wildcards and setup (700be0c)
• make spia use pre-filtered gfold gene list (89fe619)
• transcript ID version numbers can be more than one digit long, adjust the regex (b66715d)
• try release-please with classic PAT (b766250)
• try release-please with classic PAT (8c4eec5)
• update datavzrd, to avoid failing on empty spia output (56173f2)

v1.2.0

• improve normalization (use DESeq normalization on pure ext_counts from kallisto)
• improve gfold results report table, including gene symbol annotations
• improve color schemes for heatmap columns, and use new domain-mid datavzrd keyword
• include SPIA pathway enrichment analysis, with reporting in the snakemake report

v1.0.0

initial functional release to make available via snakemake workflow catalog and have a fixed tag