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.bed
file is memory-mapped, compute the column and row countsVector{SVector{4,Int}}
mean
,var
,maf
,minorallele
,missingrate
) to use the cached column or row counts.grm
calculation but it didn't go well. The original from @Hua-Zhou performs better. Mine is callednewgrm
and not exported. For some reason it allocates about 10 times as much memory as the earlier version.data
array is modified the cached values will no longer be valid.