Add preset 'DeepVariant_unfiltered', analogous to 'gatk_unfiltered', etc. #229
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Hi Mike,
I thought it'd be useful to have a DeepVariant preset that doesn't apply filters or genotype revision, called
DeepVariant_unfiltered
analogous to the existing presetsgatk_unfiltered
,xAtlas_unfiltered
, etc. Some users wanted to experiment with the settings and to try out the "NOMOD" version themselves.I copied the settings for
DeepVariantWGS
preset and just changedmin_AQ1: 0
,min_AQ2: 0
,revise_genotypes: false
.Please let me know what you think. Thank you!
p.s. It's been a while since we last talked - hope you're staying safe and healthy :)
Thanks,
Ted