APPS-2558 dxCompiler | Internal documentation, automation for custome… #3117
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| name: Unit Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - develop | |
| pull_request: | |
| branches: | |
| - main | |
| - develop | |
| types: | |
| - opened | |
| - synchronize | |
| - labeled | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| packages: read | |
| jobs: | |
| test: | |
| name: Scala Unit Tests (Staging) | |
| if: "!contains(github.event.pull_request.labels.*.name, 'minor') && !contains(github.event.pull_request.labels.*.name, 'dxcint')" | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Git Checkout | |
| uses: actions/checkout@v2 | |
| # performance optimizations https://abbbi.github.io/actions/ | |
| - uses: abbbi/github-actions-tune@v1 | |
| - name: Install Java | |
| uses: actions/setup-java@v1 | |
| with: | |
| java-version: 11 | |
| - name: Clone corpora | |
| run: | | |
| cd compiler/src/test/resources | |
| ./clone-corpora.sh | |
| - name: Run unit tests | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| AUTH_TOKEN: ${{ secrets.DX_STAGING_TEST_ROBOT_TOKEN }} | |
| SBT_OPTS: "-XX:+CMSClassUnloadingEnabled -Xmx4G -Xms1G" | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y apt-transport-https wget git openssh-server tree python3 python3-pip python3-venv | |
| cwltool=`jq -r '.execDepends.cwl[0].version' scripts/bundled_dependencies.json` | |
| salad=`jq -r '.execDepends.cwl[1].version' scripts/bundled_dependencies.json` | |
| pip3 install --upgrade pip setuptools==58.3.0 | |
| pip3 install termcolor dxpy==0.323.0 cwltool==$cwltool schema-salad==$salad pyOpenSSL==22.0.0 | |
| export PATH="$PATH:$HOME/.local/bin" | |
| # install dxda | |
| dxda_version=`jq -r '.dxda' scripts/bundled_dependencies.json` | |
| sudo wget -O/usr/local/bin/dx-download-agent https://github.com/dnanexus/dxda/releases/download/${dxda_version}/dx-download-agent-linux | |
| sudo chmod +x /usr/local/bin/dx-download-agent | |
| # set up DNAnexus staging environment | |
| dx login --noprojects --staging --token $AUTH_TOKEN | |
| dx select dxCompiler_playground | |
| # check formatting | |
| sbt scalafmtCheckAll | |
| # run unit tests | |
| cd ${GITHUB_WORKSPACE} | |
| pwd | |
| sbt version && sbt compile && sbt "testOnly -- -l prod" |