Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

check if bin id match before remove scaffolds from a bin #44

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open

check if bin id match before remove scaffolds from a bin #44

wants to merge 1 commit into from

Conversation

lijier6
Copy link

@lijier6 lijier6 commented Feb 7, 2020

I added lines to outliers.py to check whether bin's id match the id in the "outliers" file, e.g., outliers.tsv, taxon_filter.tsv and ssu_erroneous.tsv.

it will solve the uncorrectly removing of contigs problem in extreme case, such as one scaffold id exists in more than one bin in some special cases (my case).

Thank you for your work.

@lijier6 lijier6 changed the title check if bin id match when remove scaffolds from a bin check if bin id match before remove scaffolds from a bin Feb 10, 2020
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant