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Add support for CUDA and deprecate rcom platform in Uni-Dock v1.1
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ysyecust committed Mar 1, 2024
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Expand Up @@ -247,6 +247,8 @@ DOI 10.1002/jcc.21334
3. Uni-Dock computes slowly for few (<10) ligands.
The optimal application of Uni-Dock occurs in scenarios where one binding pocket interacts with numerous (in an order of 1000) ligands. As the number of ligands within a single computational batch increases, the average processing speed improves. In instances where only a few ligands are present for one binding pocket, the overhead proportion becomes considerably large, leading to slower computational performance.
4. Which GPU architectures does Uni-Dock support?
Before Uni-Dock v1.1, unidock supported rcom and cuda, but version 1.1 has a lot of performance optimizations for CUDA, so future updates will no longer support the rcom platform. If you need to use the rcom platform, you can use Uni-dock v1.0.
### Addendum to "FAQ 3 - Uni-Dock computes slowly for few (<10) ligands."
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