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move colab url from google drive to github release #78

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merged 2 commits into from
Dec 1, 2022
Merged

move colab url from google drive to github release #78

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06c0fbc
fix wrong version
ZiyaoLi Dec 1, 2022
bfd68e3
change from google drive to github release
ZiyaoLi Dec 1, 2022
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4 changes: 2 additions & 2 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -97,7 +97,7 @@ Make sure there is at least 3TB storage space for downloading (~500GB) and uncom

Inferenece and finetuning with Uni-Fold requires pretrained model parameters. Use the following command to download the parameters:
```bash
wget https://github.com/dptech-corp/Uni-Fold/releases/download/v2.2.0/unifold_params_2022-08-01.tar.gz
wget https://github.com/dptech-corp/Uni-Fold/releases/download/v2.0.0/unifold_params_2022-08-01.tar.gz
tar -zxf unifold_params_2022-08-01.tar.gz
```
It contains 1 **monomer** and 1 **multimer** pretrained model parameters, whose model name are `model_2_ft` and `multimer_ft` respectively.
Expand Down Expand Up @@ -225,7 +225,7 @@ Besides the notices in the previous section, additionaly note that:
To run UF-Symmetry, please first install the newest version of Uni-Fold, and download the parameters of UF-Symmetry:

```bash
wget https://github.com/dptech-corp/Uni-Fold/releases/download/v2.0.0/uf_symmetry_params_2022-09-06.tar.gz
wget https://github.com/dptech-corp/Uni-Fold/releases/download/v2.2.0/uf_symmetry_params_2022-09-06.tar.gz
tar -zxf uf_symmetry_params_2022-09-06.tar.gz
```

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8 changes: 4 additions & 4 deletions notebooks/unifold.ipynb
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Expand Up @@ -101,17 +101,17 @@
"\n",
"GIT_REPO='https://github.com/dptech-corp/Uni-Fold'\n",
"UNICORE_URL='https://github.com/dptech-corp/Uni-Core/releases/download/0.0.1/unicore-0.0.1+cu113torch1.12.1-cp37-cp37m-linux_x86_64.whl'\n",
"PARAM_URL='https://drive.google.com/uc?id=1A9iXMYCwP0f_U0FgISJ_6BX7FXZtglvV'\n",
"UF_SYMM_PARAM_URL='https://drive.google.com/uc?id=1UNEGzmueQTxY05QIRweKHxOjr1ht-G_Q'\n",
"PARAM_URL='https://github.com/dptech-corp/Uni-Fold/releases/download/v2.0.0/unifold_params_2022-08-01.tar.gz'\n",
"UF_SYMM_PARAM_URL='https://github.com/dptech-corp/Uni-Fold/releases/download/v2.2.0/uf_symmetry_params_2022-09-06.tar.gz'\n",
"\n",
"if [ ! -f UNIFOLD_READY ]; then\n",
" wget ${UNICORE_URL} \n",
" pip3 -q install \"unicore-0.0.1+cu113torch1.12.1-cp37-cp37m-linux_x86_64.whl\"\n",
" git clone -b main ${GIT_REPO}\n",
" pip3 -q install ./Uni-Fold\n",
" gdown ${PARAM_URL}\n",
" wget ${PARAM_URL}\n",
" tar -xzf \"unifold_params_2022-08-01.tar.gz\"\n",
" gdown ${UF_SYMM_PARAM_URL}\n",
" wget ${UF_SYMM_PARAM_URL}\n",
" tar -xzf \"uf_symmetry_params_2022-09-06.tar.gz\"\n",
"\n",
" touch UNIFOLD_READY\n",
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