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can only attack, phagocytose, or fuse one cell at a time.
Cell::ingest_cell should have set the volume update function to NULL. Otherwise, that function divides by the (now zero) volume to get a nan volume, which causes a nan radius, which causes terribleness in mechanics and other things.
check for dead cell before doing tansformations an dinteractions. removed some couts and other peformance-degrading bits.
if dummy cells (size zero cells after phagocytosis or fusion) are not cleared, computational cost mushrooms with O(n^2) or worse performance. Too many cells saw dummy cells as neighbors and interacted, thus rapidly increasing cost. now, we process and remove junk cells after teh interaction step each dt=0.1 min mechanics step
moving hard-coded parameters to XML settings
Packaged the new model as interaction-sample verified that selected representative projects still work. Various cleanup
… with macos arm64
custom data now accessible as signals and behaviors custom data can be designated as conserved quantities that are divided among daughter cells at division.
Updating Makefile of PhysiBoSS example
provide macos arm64
small ingest cell fix
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drbergman
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Aug 14, 2024
macrophage models as of 30 July
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