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Issues list

understanding the output of plotMetaDataHeatmap VS plotHeatmap
#186 opened Mar 9, 2022 by moutazhelal
1
How to create a Giotto object with a pre-computed dimensionality reduction?
#85 opened Nov 10, 2020 by msto
2
In order to generate the reference signature matrix is it ok to use AverageExpression from seurat?
#114 opened Jul 27, 2021 by smk5g5
3
Error in quadprog::solve.QP(D, d, A, bzero) : matrix D in quadratic function is not positive definite!
#121 opened Aug 27, 2021 by bmill3r
9
Giotto cell-cell interaction analysis
#140 opened Oct 7, 2021 by evenDDDDD
1
error running trendSceek
#149 opened Oct 29, 2021 by rvanguri
3
Issue with clustering - Leiden
#150 opened Oct 31, 2021 by juan-quintana2020
5
RANK enrichment issue
#152 opened Nov 3, 2021 by juan-quintana2020
4
DoHMRF fails at some cases
#162 opened Dec 13, 2021 by Chengwei94
4
doHMRF on CODEX dataset in Docker environment
#164 opened Dec 17, 2021 by huBioinfo
1
Error while running runDWLSDeconv
#170 opened Jan 17, 2022 by PerrineLacour
27
Could you please example the data folder structure?
#181 opened Feb 18, 2022 by joe-jhou2
4
Spatial correlation without preprocessing
#70 opened Sep 4, 2020 by melanieloth
5
Error when doing Leiden clustering
#184 opened Mar 4, 2022 by s849
4
Identifying DEGs between two selected sets of spots after integration
#187 opened Mar 9, 2022 by moutazhelal
3
Error in silhouetteRankTest "/par." file not found
#188 opened Mar 9, 2022 by alexanderjwhite
1
"problem too large " for normalizeGiotto()
#190 opened Mar 10, 2022 by lijinbio
3
gitto_viewer installation and run
#195 opened Mar 17, 2022 by BhardwajArch
1
Problem of Clustering
#207 opened Mar 25, 2022 by biostat0903
1
runPCA error
#215 opened Apr 7, 2022 by sailseem
3
Transformation between Seurat and Giotto object
#224 opened Apr 18, 2022 by howtofindme
9
Simplify Giotto/Python Environment Installation
#227 opened Apr 21, 2022 by daccachejoe
8
Issue of deconvolution
#228 opened Apr 22, 2022 by leihouyeung
11
plot legend order
#237 opened May 10, 2022 by joe-jhou2
1
request for the data in the paper
#1131 opened Mar 11, 2025 by Huimin721
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