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drpatelh committed Dec 17, 2022
1 parent b49dbcd commit 0f4e827
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -9,6 +9,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

- Bump minimum Nextflow version from `21.10.3` -> `22.10.1`
- Updated pipeline template to [nf-core/tools 2.7.1](https://github.com/nf-core/tools/releases/tag/2.7.1)
- [[#896](https://github.com/nf-core/rnaseq/issues/896)] - Remove `copyTo` call for iGenomes README
- [[#897](https://github.com/nf-core/rnaseq/issues/897)] - Use `--skip_preseq` by default

### Parameters
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7 changes: 0 additions & 7 deletions workflows/rnaseq.nf
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Expand Up @@ -56,13 +56,6 @@ if (params.bam_csi_index) {
}
}

// Save AWS IGenomes file containing annotation version
def anno_readme = params.genomes[ params.genome ]?.readme
if (anno_readme && file(anno_readme).exists()) {
file("${params.outdir}/genome/").mkdirs()
file(anno_readme).copyTo("${params.outdir}/genome/")
}

// Stage dummy file to be used as an optional input where required
ch_dummy_file = file("$projectDir/assets/dummy_file.txt", checkIfExists: true)

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