Update normalize-by-median.py

drtamermansour · Feb 24, 2015 · f944af3 · f944af3
1 parent 067841e
commit f944af3
Showing 1 changed file with 6 additions and 5 deletions.
diff --git a/scripts/normalize-by-median.py b/scripts/normalize-by-median.py
@@ -199,7 +199,8 @@ def get_parser():
                         default='', help='only output a single'
                         ' file with the specified filename')
     parser.add_argument('--append', default=False, action='store_true',
-                        help='append reads to the outputfile. Only with -o specified')
+                        help='append reads to the outputfile. '
+                        'Only with -o specified')
     parser.add_argument('input_filenames', metavar='input_sequence_filename',
                         help='Input FAST[AQ] sequence filename.', nargs='+')
     parser.add_argument('--report-total-kmers', '-t', action='store_true',
@@ -243,10 +244,10 @@ def main():  # pylint: disable=too-many-branches,too-many-statements
 
     if args.single_output_filename != '':
         output_name = args.single_output_filename
-            if append:
-                outfp = open(args.single_output_filename, 'a')
-            else:
-                outfp = open(args.single_output_filename, 'w+')
+        if append:
+            outfp = open(args.single_output_filename, 'a')
+        else:
+            outfp = open(args.single_output_filename, 'w+')
     else:
         output_name = os.path.basename(input_filename) + '.keep'
         outfp = open(output_name, 'w+')