place outputs in results directory #16
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| name: Run example galaxy MacOS | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [macos-latest] | |
| python-version: ['3.11'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Get working directory | |
| # run: pwd | |
| run: echo $HOME | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install numpy astropy PyQt6 scipy matplotlib pytest multiprocess latex spectral_cube extinction h5py joblib | |
| # force reinstall of numpy due to v2.0.0 not working properly with other packages | |
| pip install --force-reinstall -v "numpy==1.26.4" | |
| #python setup.py install | |
| # python -m pip install --upgrade pip | |
| # pip install flake8 pytest | |
| # if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Install ngist | |
| run: | | |
| python setup.py install | |
| # - name : Lint with flake8 | |
| # run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Checking the pipline runs NGC 0000 | |
| run: gistPipeline --config=./.github/workflows/tests/gistTutorial/configFiles/MasterConfig.yaml --default-dir=./.github/workflows/tests/gistTutorial/configFiles/defaultDir_mac | |
| - name: Checking pipeline results | |
| run: python ./.github/workflows/tests/check_outputs.py |