use pip for ngist install and remove numpy reinstall #17
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name: Run example galaxy ubuntu | |
on: [push] | |
jobs: | |
build: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest] | |
python-version: ['3.11'] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Get working directory | |
# run: pwd | |
run: | | |
echo $HOME | |
echo $PWD | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install numpy astropy PyQt6 scipy matplotlib pytest latex spectral_cube extinction h5py joblib | |
# force reinstall of numpy due to v2.0.0 not working properly with other packages --> no longer an issue? | |
# pip install --force-reinstall "numpy==1.26.4" | |
#python setup.py install | |
# python -m pip install --upgrade pip | |
# pip install flake8 pytest | |
# if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
- name: Install ngist | |
run: | | |
# python setup.py install | |
pip install . | |
# - name : Lint with flake8 | |
# run: | | |
# stop the build if there are Python syntax errors or undefined names | |
# flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
# flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
- name: Checking the pipline runs NGC 0000 | |
run: gistPipeline --config=./.github/workflows/tests/gistTutorial/configFiles/MasterConfig.yaml --default-dir=./.github/workflows/tests/gistTutorial/configFiles/defaultDir_ubuntu | |
- name: Checking pipeline results | |
run: python ./.github/workflows/tests/check_outputs.py |