place output in results directory

drtobybrown · Oct 16, 2024 · fecca69 · fecca69
1 parent 0e3894b
commit fecca69
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Showing 2 changed files with 7 additions and 6 deletions.
diff --git a/.github/workflows/tests/check_outputs.py b/.github/workflows/tests/check_outputs.py
@@ -1,8 +1,9 @@
 import os
-home_dir = os.path.expanduser('~')
 
-print(home_dir)
-output_dir = f"{home_dir}/work/ngist/ngist/NGC0000Example"
+# home_dir = os.path.expanduser('~')
+
+# print(home_dir)
+output_dir = f"./.github/workflows/tests/gistTutorial/results/./NGC0000Example"
 
 with open(f"{output_dir}/LOGFILE") as f:
 	for line in f:
@@ -20,8 +21,8 @@
 #Check the pipeline creates the correct files
 output_files = ["CONFIG","LOGFILE",
 				# "NGC0000Example_AllSpectra.fits", # no longer outputted
-				"NGC0000Example_BinSpectra_linear.fits",
-				"NGC0000Example_BinSpectra.fits",
+				"NGC0000Example_BinSpectra_linear.hdf5",
+				"NGC0000Example_BinSpectra.hdf5",
 				"NGC0000Example_gas_BIN.fits",
 				"NGC0000Example_gas-bestfit_BIN.fits",
 				"NGC0000Example_gas-cleaned_BIN.fits",

diff --git a/.github/workflows/tests/gistTutorial/configFiles/defaultDir_ubuntu b/.github/workflows/tests/gistTutorial/configFiles/defaultDir_ubuntu
@@ -10,6 +10,6 @@
 # user-defined modules. inputDir and outputDir are applied to all active GIST modules. 
 #
 inputDir=./.github/workflows/tests/gistTutorial/inputData
-outputDir=/home/runner/work/ngist/ngist
+outputDir=./.github/workflows/tests/gistTutorial/results
 configDir=./.github/workflows/tests/gistTutorial/configFiles
 templateDir=./.github/workflows/tests/gistTutorial/spectralTemplates