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Update develop-ref after #1754#1758

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JohnHalleyGotway merged 118 commits intodevelop-refdtcenter/MET:develop-reffrom developdtcenter/MET:developCopy head branch name to clipboardApr 17, 2021

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Commits on Jan 26, 2021

• Start on write netcdf pickle alternative.

  

  David Fillmore

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• Write dataplane array.

  

  David Fillmore

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• Start on read of netcdf as pickle alternative.

  

  David Fillmore

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Commits on Feb 2, 2021

• Create attribute variables.

  

  David Fillmore

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Commits on Feb 3, 2021

• Use global attributes for met_info attrs.

  

  David Fillmore

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Commits on Feb 4, 2021

• Add grid structure.

  

  David Fillmore

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• Read metadata back into met_info.attrs.

  

  David Fillmore

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• Convert grid.nx and grid.ny to int.

  

  David Fillmore

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• Rename _name key to name.

  

  David Fillmore

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• Removed pickle write.

  

  David Fillmore

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Commits on Feb 5, 2021

• Fixed write_pickle_dataplane to work for both numpy and xarray.

  

  David Fillmore

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• Use items() to iterate of key, value attrs.

  

  David Fillmore

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Commits on Feb 13, 2021

• Write temporary text file.

  

  David Fillmore

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Commits on Feb 17, 2021

• Renamed scripts.

  

  David Fillmore

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• Changed script names in Makefile.am.

  

  David Fillmore

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• Replaced pickle with tmp_nc.

  

  David Fillmore

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• Fixed wrapper script names.

  

  David Fillmore

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• Test for attrs in met_in.met_data.

  

  David Fillmore

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Commits on Feb 18, 2021

• Initial version of read_tmp_point module.

  

  David Fillmore

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• Added read_tmp_point.py to install list.

  

  David Fillmore

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• Start on Python3_Script::read_tmp_point.

  

  David Fillmore

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• Write MPR tmp ascii file.

  

  David Fillmore

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• Renamed to read_tmp_ascii to use for point point and MPR.

  

  David Fillmore

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• Renamed to read_tmp_ascii to use for point point and MPR.

  

  David Fillmore

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Commits on Feb 19, 2021

• Define Python3_Script::import_read_tmp_ascii_py.

  

  David Fillmore

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• Call Python3_Script::import_read_tmp_ascii_py.

  

  David Fillmore

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Commits on Feb 20, 2021

• Append MET_BASE/wrappers to sys.path.

  

  David Fillmore

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• Finished implementation of Python3_Script::import_read_tmp_ascii_py.

  

  David Fillmore

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• Call Python3_Script::read_tmp_ascii in python_handler.

  

  David Fillmore

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Commits on Feb 22, 2021

• Revised python3_script::read_tmp_ascii with call to run, PyRun_String.

  

  David Fillmore

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• Return PyObject* from Python3_Script::run.

  

  David Fillmore

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• Restored call to run_python_string for now.

  

  David Fillmore

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Commits on Feb 26, 2021

• Per #1429, enhance error message from DataLine::get_item(). (#1682)

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• Feature 1429 tc_log second try (#1686)

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• Feature 1588 ps_log (#1687)

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• #1454 Disabled plot_data_plane_CESM_SSMI_microwave and plot_data_plane_CESM_sea_ice_nc becaues of not evenly spaced

  

  Howard Soh

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• #1454 Moved NC attribute name to nc_utils.h

  

  Howard Soh

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• #1454 Corrected sanity checking for lat/lon projection based on the percentage of the delta instead of fixed tolerance

  

  Howard Soh

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• #1454 Corrected sanity checking for lat/lon projection based on the percentage of the delta instead of fixed tolerance

  

  Howard Soh

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Commits on Mar 1, 2021

• #1454 Corrected data.delta_lon

  

  Howard Soh

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• #1454 Change bact to use diff instead of absolute value of diff

  

  Howard Soh

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• 454 Deleted instea dof commenting out

  

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• 454 Deleted instea dof commenting out

  

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• Merge pull request #1688 from dtcenter/feature_1454_nccf_grid_definition

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Commits on Mar 2, 2021

• Feature 1684 bss and 1685 single reference model (#1689)

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• Per #1691, add met-10.0.0-beta4 release notes. (#1692)

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Commits on Mar 3, 2021

• Updated Python documentation

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Commits on Mar 4, 2021

• Per #1694, add VarInfo::magic_str_attr() to construct a field summary string from the name_attr() and level_attr() functions.

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• Per #1694, fixing 2 issues here. There was a bug in the computation of the max value. Had a less-than sign that should have been greater-than. Also, switch from tracking data by it's magic_str() to…

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Commits on Mar 5, 2021

• Per #1694, just switching to consistent variable name.

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• Just consistent spacing.

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• Merge pull request #1696 from dtcenter/bugfix_1694_grid_diag

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• Added python3_script::import_read_tmp_ascii.

  

  David Fillmore

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• Merge branch 'develop' into feature_1319_no_pickle

  

  David Fillmore

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• Restored read_tmp_ascii call.

  

  David Fillmore

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• Added lookup into ascii module.

  

  David Fillmore

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• Adding files for ReadTheDocs

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• Adding .yaml file for ReadTheDocs

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• Updated path to requirements.txt file

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• Updated path to conf.py file

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• Removing ReadTheDocs files and working in separate branch

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Commits on Mar 7, 2021

• Return PyObject* from read_tmp_ascii.

  

  David Fillmore

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• Put point_data in global namespace.

  

  David Fillmore

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• Remove temporary ascii file.

  

  David Fillmore

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• Added tmp_ascii_path.

  

  David Fillmore

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• Removed read_obs_from_pickle.

  

  David Fillmore

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Commits on Mar 9, 2021

• Trying different options for formats (#1702)

  jprestop

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Commits on Mar 10, 2021

• Per #1706, add bugfix to the develop branch. Also add a new job to unit_stat_analysis.xml to test out the aggregation of the ECNT line type. This will add new unit test output and cause the NB to f…

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• Feature 1471 python_grid (#1704)

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Commits on Mar 11, 2021

• Committing a fix for unit_python.xml directly to the develop branch. We referenced in a place where it's not defined.

  

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• Merge branch 'develop-ref' into develop

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• Add *.dSYM to the .gitignore files in the src and internal_tests directories.

  JohnHalleyGotway

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Commits on Mar 12, 2021

• Replaced tmp netcdf _name attribute with name_str.

  

  David Fillmore

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Commits on Mar 15, 2021

• Append user script path to system path.

  

  David Fillmore

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• Merge pull request #1699 from dtcenter/feature_1319_no_pickle

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• Revert "Feature 1319 no pickle" (#1717)

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Commits on Mar 17, 2021

• Fixed typos, added content, and modified release date format

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Commits on Mar 18, 2021

• #1715 Initial release

  

  Howard Soh

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• #1715 Do not combined if there are no overlapping beteewn TQZ and UV records

  

  Howard Soh

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• #1715 Added pb2nc_compute_pbl_cape

  

  Howard Soh

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• #1715 Added pb2nc_compute_pbl_cape

  

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• #1715 Reduced obs_bufr_var. Removed pb_report_type

  

  Howard Soh

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• #1715 Added a blank line for Error/Warning

  

  Howard Soh

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• Merge pull request #1719 from dtcenter/bugfix_1715_pb2nc_seg_fault_with_pbl

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Commits on Mar 19, 2021

• Per #1725, return good status from TrackInfoArray::add() when using an ATCF line to create a new track. (#1726)

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• Per #1705, update the threshold node heirarchy by adding a climo_prob() function to determine the climatological probability of a CDP-type threshold. Also update derive_climo_prob() in pair_base.cc…

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• Bugfix 1716 develop perc_thresh (#1722)

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• Update pull_request_template.md

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Commits on Mar 29, 2021

• Feature 1733 exc (#1734)

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Commits on Mar 30, 2021

• Bugfix 1737 develop little_r (#1739)

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Commits on Apr 1, 2021

• Feature GitHub actions (#1742)

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• Feature 1575 large_diffs (#1741)

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Commits on Apr 2, 2021

• Feature 1319 no pickle (#1720)

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Commits on Apr 4, 2021

• Feature 1736 out_stat (#1744)

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• Per #1319, this is a hotfix to the develop branch. While running unit_python.xml works via the command line, it fails when run through cron. The problem is the PATH setting. Need to have the anacon…

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• Merge branch 'develop' of https://github.com/dtcenter/MET into develop

  

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Commits on Apr 5, 2021

• Just lining up a log message in the output of gen_vx_mask.

  

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• Per #1319, setting PATH as an envvar might cause problems. All variables set prior to the test are unset afterwards! So we'd run all the rest of the tests after unit_python.xml with an empty path. …

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• Trying to get the PATH setting correct for unit_python.xml.

  

  John Halley Gotway

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• Changed weblink for METplus documentation

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• per #1319 added netCDF4 python package to MET docker image so it is available for python embedding cases that use MET_PYTHON_EXE

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Commits on Apr 6, 2021

• Feature 1747 pylonglong (#1748)

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Commits on Apr 7, 2021

• Hotfix for the develop branch in tc_pairs.cc. The METplus unit tests kept failing through GHA with a divide by zero error. It occurs in compute_track_err() but only for a very specific set of data.…

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Commits on Apr 9, 2021

• Turned specific section numbers into linked sections because section numbers can change

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• Removed hard-coded references to section numbers

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• Feature 1714 tc_gen (#1750)

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Commits on Apr 12, 2021

• Merge branch 'develop-ref' into develop

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Commits on Apr 14, 2021

• feature_1552_gcc_10 (#1752)

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Commits on Apr 15, 2021

• #1755 Support time string for slicing at MetNcCFDataFile::collect_time_offsets

  

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• #1755 Support time string for slicing at MetNcCFDataFile::collect_time_offsets

  

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• Merge pull request #1756 from dtcenter/bugfix_1755_nccf_timelevel_by_string

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Commits on Apr 16, 2021

• Feature 1735 stat_analysis (#1754)

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• Per #1753, this one change to write_tmp_data.py solves this problem. When creating the variable to write the temp NetCDF file, we just need to pass through the fill value for the data. Also, make t…

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• Per #1753, make the read_tmp_dataplane.py script less verbose.

  

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• Per #1753, there are 3 calls to the user's python version throughout MET. Update all 3 to print consistent log message when writing/reading the temp file. In particular, print the system command th…

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• Merge remote-tracking branch 'origin/develop' into feature_1753_python_fill

  

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• Merge branch 'feature_1753_python_fill' into develop

  

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• Per #1753, wrap the call to get_fill_value() in a try block in case the input in a regular numpy array instead of a masked array.

  

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