per #1402, rearrange and clean up config files for precipitation use …

…cases

parm/use_cases/model_applications/precipitation/EnsembleStat_fcstHRRRE_FcstOnly_NetCDF.conf

@@ -1,66 +1,74 @@
 [config]
 
-## Configuration-related settings such as the process list, begin and end times, etc.
-PROCESS_LIST = EnsembleStat 
+# Documentation for this use case can be found at
+# https://metplus.readthedocs.io/en/latest/generated/model_applications/precipitation/EnsembleStat_fcstHRRRE_FcstOnly_NetCDF.html
 
-# time looping - options are INIT, VALID, RETRO, and REALTIME
+# For additional information, please see the METplus Users Guide.
+# https://metplus.readthedocs.io/en/latest/Users_Guide
+
+###
+# Processes to run
+# https://metplus.readthedocs.io/en/latest/Users_Guide/systemconfiguration.html#process-list
+###
+
+PROCESS_LIST = EnsembleStat
+
+
+###
+# Time Info
+# LOOP_BY options are INIT, VALID, RETRO, and REALTIME
 # If set to INIT or RETRO:
 #   INIT_TIME_FMT, INIT_BEG, INIT_END, and INIT_INCREMENT must also be set
 # If set to VALID or REALTIME:
 #   VALID_TIME_FMT, VALID_BEG, VALID_END, and VALID_INCREMENT must also be set
-LOOP_BY = INIT
+# LEAD_SEQ is the list of forecast leads to process
+# https://metplus.readthedocs.io/en/latest/Users_Guide/systemconfiguration.html#timing-control
+###
 
-# Format of INIT_BEG and INT_END using % items
-# %Y = 4 digit year, %m = 2 digit month, %d = 2 digit day, etc.
-# see www.strftime.org for more information
-# %Y%m%d%H expands to YYYYMMDDHH
+LOOP_BY = INIT
 INIT_TIME_FMT = %Y%m%d%H
-
-# Start time for METplus run - must match INIT_TIME_FMT
 INIT_BEG=2019051912
-
-# End time for METplus run - must match INIT_TIME_FMT
-INIT_END=2019052000 
-
-# Increment between METplus runs (in seconds if no units are specified)
-#  Must be >= 60 seconds
+INIT_END=2019052000
 INIT_INCREMENT=43200
 
-# List of forecast leads to process for each run time (init or valid)
-# In hours if units are not specified
-# If unset, defaults to 0 (don't loop through forecast leads)
 LEAD_SEQ = 3,6,9,12
 
-# Order of loops to process data - Options are times, processes
-# Not relevant if only one item is in the PROCESS_LIST
-# times = run all wrappers in the PROCESS_LIST for a single run time, then
-#   increment the run time and run all wrappers again until all times have
-#   been evaluated.
-# processes = run the first wrapper in the PROCESS_LIST for all times
-#   specified, then repeat for the next item in the PROCESS_LIST until all
-#   wrappers have been run
 LOOP_ORDER = processes
 
-# Name to identify model (forecast) data in output
-MODEL = HRRRE
 
-OBTYPE = ANALYS
+###
+# File I/O
+# https://metplus.readthedocs.io/en/latest/Users_Guide/systemconfiguration.html#directory-and-filename-template-info
+###
 
-ENSEMBLE_STAT_N_MEMBERS = 3
+FCST_ENSEMBLE_STAT_INPUT_DIR = {INPUT_BASE}/model_applications/precipitation/HRRRE/pcp_combine
+FCST_ENSEMBLE_STAT_INPUT_TEMPLATE = hrrrebegin_end_incr(1,3,1,2)_{init?fmt=%Y%m%d%H}f{lead?fmt=%HHH}_A03.nc
+
+ENSEMBLE_STAT_OUTPUT_DIR = {OUTPUT_BASE}/model_applications/precipitation/EnsembleSTat_fcstHRRRE_FcstOnly_NetCDF/EnsembleStat
+ENSEMBLE_STAT_OUTPUT_TEMPLATE = {init?fmt=%Y%m%d%H%M}
+
+
+###
+# Field Info
+# https://metplus.readthedocs.io/en/latest/Users_Guide/systemconfiguration.html#field-info
+###
 
 ENS_VAR1_NAME = APCP_03
 ENS_VAR1_LEVELS = "(*,*)"
 
-# The MET ensemble_stat logging level
-# 0 quiet to 5 loud, Verbosity setting for MET output, 2 is default.
-# This takes precendence over the general MET logging level set in metplus_logging.conf
-LOG_ENSEMBLE_STAT_VERBOSITY = 3
 
-# MET Configuration files for EnsembleSTat
-ENSEMBLE_STAT_CONFIG_FILE = {CONFIG_DIR}/EnsembleStatConfig_wrapped
+###
+# EnsembleStat Settings
+# https://metplus.readthedocs.io/en/latest/Users_Guide/wrappers.html#ensemblestat
+###
 
-ENSEMBLE_STAT_ENS_THRESH = 0.5
 
+MODEL = HRRRE
+OBTYPE = ANALYS
+
+ENSEMBLE_STAT_N_MEMBERS = 3
+
+ENSEMBLE_STAT_ENS_THRESH = 0.5
 ENSEMBLE_STAT_ENS_VLD_THRESH = 1.0
 
 OBS_ENSEMBLE_STAT_WINDOW_BEGIN = -5400
@@ -82,27 +90,3 @@ ENSEMBLE_STAT_ENSEMBLE_FLAG_RANK = FALSE
 ENSEMBLE_STAT_ENSEMBLE_FLAG_WEIGHT = FALSE
 
 ENSEMBLE_STAT_OUTPUT_PREFIX = APCP_03
-
-[dir]
-
-CONFIG_DIR={PARM_BASE}/met_config
-
-# input and output directories for ensemble_stat 
-# Input File Directories, GRID_STAT and POINT_STAT
-FCST_ENSEMBLE_STAT_INPUT_DIR = {INPUT_BASE}/model_applications/precipitation/HRRRE/pcp_combine
-
-# Ensemble stat output directory
-ENSEMBLE_STAT_OUTPUT_DIR = {OUTPUT_BASE}/{MODEL}/ensemble
-
-ENSEMBLE_STAT_INPUT_DIR = {INPUT_BASE}/model_applications/precipitation/HRRRE/pcp_combine
-ENSEMBLE_STAT_OUTPUT_DIR = {OUTPUT_BASE}/model_applications/precipitation/EnsembleSTat_fcstHRRRE_FcstOnly_NetCDF/EnsembleStat
-
-[filename_templates]
-
-# the following template uses begin_end_incr() notation that expands to:
-#  hrrre01_{init?fmt=%Y%m%d%H}f{lead?fmt=%HHH}_A03.nc,
-#  hrrre02_{init?fmt=%Y%m%d%H}f{lead?fmt=%HHH}_A03.nc,
-#  hrrre03_{init?fmt=%Y%m%d%H}f{lead?fmt=%HHH}_A03.nc
-FCST_ENSEMBLE_STAT_INPUT_TEMPLATE = hrrrebegin_end_incr(1,3,1,2)_{init?fmt=%Y%m%d%H}f{lead?fmt=%HHH}_A03.nc
-
-ENSEMBLE_STAT_OUTPUT_TEMPLATE = {init?fmt=%Y%m%d%H%M}