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Biological Data file format transformation using Command Line Interface scripts.

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.DS_Store
.DS_Store
 
 
README.md
README.md
 
 
VCF_dip2hap.py
VCF_dip2hap.py
 
 
add_EGIgeno_from_vcf.py
add_EGIgeno_from_vcf.py
 
 
add_EGIgeno_from_vcf_correct.py
add_EGIgeno_from_vcf_correct.py
 
 
beagle2treemix.py
beagle2treemix.py
 
 
cal_freq_from_merged_loter_popseg.py
cal_freq_from_merged_loter_popseg.py
 
 
change_vcf_POS.py
change_vcf_POS.py
 
 
extract_vcf_info.py
extract_vcf_info.py
 
 
fasta2phylip.py
fasta2phylip.py
 
 
fetchBAMQCDepth.py
fetchBAMQCDepth.py
 
 
fetchBeaglefile.py
fetchBeaglefile.py
 
 
fetchFastq.py
fetchFastq.py
 
 
fetch_mRNA_from_gtf.py
fetch_mRNA_from_gtf.py
 
 
fetch_samples_from_newick.py
fetch_samples_from_newick.py
 
 
filterFastaGap.py
filterFastaGap.py
 
 
filterTreemixInput.py
filterTreemixInput.py
 
 
generate_Dstat_parfile.py
generate_Dstat_parfile.py
 
 
generate_f3_parfile.py
generate_f3_parfile.py
 
 
gff2sqliteDB.py
gff2sqliteDB.py
 
 
maskVCF_lowQualityGT.py
maskVCF_lowQualityGT.py
 
 
maskVCF_phasedGT.py
maskVCF_phasedGT.py
 
 
mask_ancient_transi.py
mask_ancient_transi.py
 
 
merge_loter_result.py
merge_loter_result.py
 
 
merge_plink2_afreq.py
merge_plink2_afreq.py
 
 
merge_stringtie_gene_abund.py
merge_stringtie_gene_abund.py
 
 
npy2tsv.py
npy2tsv.py
 
 
plinkfreq2Treemix_2021.py
plinkfreq2Treemix_2021.py
 
 
plinkfreq2treemix.py
plinkfreq2treemix.py
 
 
plinkfreq2treemix_old.py
plinkfreq2treemix_old.py
 
 
plinkfreq_reform.py
plinkfreq_reform.py
 
 
produce_bcftools_call.py
produce_bcftools_call.py
 
 
produce_sention_bwa.py
produce_sention_bwa.py
 
 
read_realSFS.py
read_realSFS.py
 
 
resample_vcf.py
resample_vcf.py
 
 
shuffle_vcf.py
shuffle_vcf.py
 
 
split_beagleGL_toInd.py
split_beagleGL_toInd.py
 
 
split_egi.py
split_egi.py
 
 
split_plink_afreq.py
split_plink_afreq.py
 
 
stat_Sprime.py
stat_Sprime.py
 
 
vcf2DFOIL.py
vcf2DFOIL.py
 
 
vcf2IUPACGT.py
vcf2IUPACGT.py
 
 
vcf2Loter.py
vcf2Loter.py
 
 
vcf2TreeMix_ind.py
vcf2TreeMix_ind.py
 
 
vcf2callformat.py
vcf2callformat.py
 
 
vcf2excel.py
vcf2excel.py
 
 
vcf2fasta_hap.py
vcf2fasta_hap.py
 
 
vcf2treemix.py
vcf2treemix.py
 
 
vcf_het_to_hom.py
vcf_het_to_hom.py
 
 

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biotrans_cli

Biological Data file format transformation using Command Line Interface scripts.

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Biological Data file format transformation using Command Line Interface scripts.

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