Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

add custom easyblock for RELION #2773

Draft
wants to merge 3 commits into
base: develop
Choose a base branch
from

Conversation

jfgrimm
Copy link
Member

@jfgrimm jfgrimm commented Aug 10, 2022

(created using eb --new-pr)

@jfgrimm jfgrimm marked this pull request as draft August 10, 2022 17:08
@jfgrimm jfgrimm added this to the 4.x milestone Aug 10, 2022
@jfgrimm jfgrimm added the new label Aug 10, 2022
@boegel boegel changed the title new easyblock for relion new easyblock for RELION Aug 31, 2022
@boegel boegel changed the title new easyblock for RELION add custom easyblock for RELION Aug 31, 2022
@JuergenUniVie
Copy link

lot of wrong links:

./relion_refine_mpi: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.26' not found (required by ./relion_refine_mpi)
linux-vdso.so.1 (0x00007ffc005f8000)
libcufft.so.10 => /usr/local/cuda/targets/x86_64-linux/lib/libcufft.so.10 (0x00007f162eabe000)
libmpi.so.40 => /cluster/GENERIC/software/OpenMPI/4.1.1-GCC-10.3.0/lib/libmpi.so.40 (0x00007f1637650000)
libdl.so.2 => /lib64/libdl.so.2 (0x00007f162e8ba000)
libtiff.so.5 => /lib64/libtiff.so.5 (0x00007f162e641000)
libfftw3f.so.3 => /lib64/libfftw3f.so.3 (0x00007f162e22a000)
libfftw3.so.3 => /lib64/libfftw3.so.3 (0x00007f162de24000)
libcurand.so.10 => /usr/local/cuda/targets/x86_64-linux/lib/libcurand.so.10 (0x00007f162822a000)
libpng16.so.16 => /lib64/libpng16.so.16 (0x00007f1627ff5000)
libjpeg.so.8 => /lib64/libjpeg.so.8 (0x00007f16375a3000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f1627dd5000)
librt.so.1 => /lib64/librt.so.1 (0x00007f1627bcd000)
libstdc++.so.6 => /lib64/libstdc++.so.6 (0x00007f1627838000)
libm.so.6 => /lib64/libm.so.6 (0x00007f16274b6000)
libgomp.so.1 => /lib64/libgomp.so.1 (0x00007f162727e000)
libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f1627066000)
libc.so.6 => /lib64/libc.so.6 (0x00007f1626ca1000)
/lib64/ld-linux-x86-64.so.2 (0x00007f1637549000)
libopen-rte.so.40 => /cluster/GENERIC/software/OpenMPI/4.1.1-GCC-10.3.0/lib/libopen-rte.so.40 (0x00007f1626be9000)
libopen-orted-mpir.so => /cluster/GENERIC/software/OpenMPI/4.1.1-GCC-10.3.0/lib/libopen-orted-mpir.so (0x00007f163759c000)
libopen-pal.so.40 => /cluster/GENERIC/software/OpenMPI/4.1.1-GCC-10.3.0/lib/libopen-pal.so.40 (0x00007f1626b3a000)
libutil.so.1 => /lib64/libutil.so.1 (0x00007f1626936000)
libhwloc.so.15 => /cluster/GENERIC/software/hwloc/2.4.1-GCCcore-10.3.0/lib/libhwloc.so.15 (0x00007f16268dd000)
libpciaccess.so.0 => /cluster/GENERIC/software/libpciaccess/0.16-GCCcore-10.3.0/lib/libpciaccess.so.0 (0x00007f1637590000)
libxml2.so.2 => /cluster/GENERIC/software/libxml2/2.9.10-GCCcore-10.3.0/lib/libxml2.so.2 (0x00007f162676e000)
libz.so.1 => /lib64/libz.so.1 (0x00007f1626556000)
liblzma.so.5 => /cluster/GENERIC/software/XZ/5.2.5-GCCcore-10.3.0/lib/liblzma.so.5 (0x00007f162652e000)
libevent_core-2.1.so.7 => /cluster/GENERIC/software/libevent/2.1.12-GCCcore-10.3.0/lib/libevent_core-2.1.so.7 (0x00007f16264f7000)
libevent_pthreads-2.1.so.7 => /cluster/GENERIC/software/libevent/2.1.12-GCCcore-10.3.0/lib/libevent_pthreads-2.1.so.7 (0x00007f163758c000)
libjbig.so.2.1 => /lib64/libjbig.so.2.1 (0x00007f16262eb000)
libjpeg.so.62 => /lib64/libjpeg.so.62 (0x00007f1626082000)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants