Merge pull request #11022 from furstj/20200724111632_new_pr_OpenFOAM8

{cae}[foss/2020a] OpenFOAM v8
easybuilders · Jul 27, 2020 · 02f5e9f · 02f5e9f
2 parents 484cbbd + 812aa1e
commit 02f5e9f
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diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-8-cleanup.patch b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-8-cleanup.patch
@@ -0,0 +1,297 @@
+# This patch removes all need for the ThirdParty files of OpenFOAM:
+# we use EB dependencies for everything. It adjusts the paths, variables, etc
+# We also let the install dir, compiler, etc be set by EB.
+# Lastly, we also fix a small compile issue in 'ptscotchDecomp.C'
+# by Jiri Furst <jiri.furst@gmail.com>, based on patch for OpenFOAM 5.0 and 4.1 by 
+# Kennet Hoste (HPC-UGent) and Ward Poelmans <wpoely86@gmail.com>
+diff -ru OpenFOAM-7-version-7.orig/applications/utilities/mesh/manipulation/setSet/Allwmake OpenFOAM-7-version-7/applications/utilities/mesh/manipulation/setSet/Allwmake
+--- OpenFOAM-7-version-7.orig/applications/utilities/mesh/manipulation/setSet/Allwmake  2018-07-09 18:01:02.000000000 +0200
++++ OpenFOAM-7-version-7/applications/utilities/mesh/manipulation/setSet/Allwmake       2018-08-14 11:18:48.188975085 +0200
+@@ -7,19 +7,12 @@
+ unset COMP_FLAGS LINK_FLAGS
+
+ # Use readline if available
+-if [ -f /usr/include/readline/readline.h ]
++if [ -f $EBROOTLIBREADLINE/include/readline/readline.h ]
+ then
+     echo "    found <readline/readline.h>  --  enabling readline support."
+     export COMP_FLAGS="-DHAS_READLINE"
+
+-    # readline may require ncurses
+-    if [ -f /usr/include/ncurses/ncurses.h ]
+-    then
+-        echo "    found <ncurses/ncurses.h>  --  maybe required by readline."
+-        export LINK_FLAGS="-lreadline -lncurses"
+-    else
+-        export LINK_FLAGS="-lreadline"
+-    fi
++    export LINK_FLAGS="-L$EBROOTLIBREADLINE/lib -lreadline -L$EBROOTNCURSES -lncurses"
+ fi
+
+ wmake $targetType
+diff -ru OpenFOAM-7-version-7.orig/applications/utilities/postProcessing/graphics/PVReaders/Allwmake OpenFOAM-7-version-7/applications/utilities/postProcessing/graphics/PVReaders/Allwmake
+--- OpenFOAM-7-version-7.orig/applications/utilities/postProcessing/graphics/PVReaders/Allwmake 2018-07-09 18:01:02.000000000 +0200
++++ OpenFOAM-7-version-7/applications/utilities/postProcessing/graphics/PVReaders/Allwmake      2018-08-14 11:21:25.280419729 +0200
+@@ -17,8 +17,8 @@
+ fi
+
+ # Ensure CMake gets the correct C/C++ compilers
+-[ -n "$WM_CC" ] && export CC="$WM_CC"
+-[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
++#[ -n "$WM_CC" ] && export CC="$WM_CC"
++#[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
+
+ wmake $targetType vtkPVblockMesh
+ wmake $targetType vtkPVFoam
+diff -ru OpenFOAM-8.orig/applications/utilities/postProcessing/graphics/PVReaders/CMakeLists.txt OpenFOAM-8/applications/utilities/postProcessing/graphics/PVReaders/CMakeLists.txt
+--- OpenFOAM-8.orig/applications/utilities/postProcessing/graphics/PVReaders/CMakeLists.txt     2020-07-24 09:22:59.409594780 +0200
++++ OpenFOAM-8/applications/utilities/postProcessing/graphics/PVReaders/CMakeLists.txt  2020-07-24 09:46:24.856457402 +0200
+@@ -2,6 +2,8 @@
+
+ PROJECT(PVReaders)
+
++FIND_PACKAGE(MPI REQUIRED)
++
+ FIND_PACKAGE(ParaView REQUIRED)
+
+ INCLUDE(GNUInstallDirs)
+diff -ru OpenFOAM-7-version-7.orig/etc/bashrc OpenFOAM-7-version-7/etc/bashrc
+--- OpenFOAM-7-version-7.orig/etc/bashrc        2018-07-09 18:01:02.000000000 +0200
++++ OpenFOAM-7-version-7/etc/bashrc     2018-08-14 11:29:14.168761602 +0200
+@@ -43,8 +43,9 @@
+ # Please set to the appropriate path if the default is not correct.
+ #
+ [ "$BASH" -o "$ZSH_NAME" ] && \
+-export FOAM_INST_DIR=$(cd $(dirname ${BASH_SOURCE:-$0})/../.. && pwd -P) || \
+-export FOAM_INST_DIR=$HOME/$WM_PROJECT
++#export FOAM_INST_DIR=$(cd $(dirname ${BASH_SOURCE:-$0})/../.. && pwd -P) || \
++#export FOAM_INST_DIR=$HOME/$WM_PROJECT
++# For Easybuild: set by the module
+ # export FOAM_INST_DIR=~$WM_PROJECT
+ # export FOAM_INST_DIR=/opt/$WM_PROJECT
+ # export FOAM_INST_DIR=/usr/local/$WM_PROJECT
+diff -ru OpenFOAM-7-version-7.orig/etc/config.sh/CGAL OpenFOAM-7-version-7/etc/config.sh/CGAL
+--- OpenFOAM-7-version-7.orig/etc/config.sh/CGAL	2020-07-01 08:32:09.046842000 +0200V
++++ OpenFOAM-7-version-7/etc/config.sh/CGAL	2020-07-01 08:40:13.226755000 +0200
+@@ -39,22 +39,7 @@
+ #
+ #------------------------------------------------------------------------------
+
+-boost_version=boost-system
+-#boost_version=boost-1.55.0
+-#boost_version=boost-1.72.0
+-
+-cgal_version=cgal-system
+-#cgal_version=CGAL-4.10
+-#cgal_version=CGAL-5.0.2
+-
+-if [ "$boost_version" != "boost-system" ]
+-then
+-    export BOOST_ARCH_PATH=$WM_THIRD_PARTY_DIR/$boost_version
+-fi
+-
+-if [ "$cgal_version" != "cgal-system" ]
+-then
+-    export CGAL_ARCH_PATH=$WM_THIRD_PARTY_DIR/$cgal_version
+-fi
++export CGAL_ARCH_PATH=$EBROOTCGAL
++export BOOST_ARCH_PATH=$EBROOTBOOST
+
+ #------------------------------------------------------------------------------
+diff -ru OpenFOAM-7-version-7.orig/etc/config.sh/gperftools OpenFOAM-7-version-7/etc/config.sh/gperftools
+--- OpenFOAM-7-version-7.orig/etc/config.sh/gperftools  2018-07-09 18:01:02.000000000 +0200
++++ OpenFOAM-7-version-7/etc/config.sh/gperftools       2018-08-14 11:37:07.582078984 +0200
+@@ -29,13 +29,7 @@
+ #
+ #------------------------------------------------------------------------------
+
+-version=svn
+-gperftools_install=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER
+-
+-GPERFTOOLS_VERSION=gperftools-$version
+-GPERFTOOLS_ARCH_PATH=$gperftools_install/$GPERFTOOLS_VERSION
+-
+-export PATH=$GPERFTOOLS_ARCH_PATH/bin:$PATH
+-export LD_LIBRARY_PATH=$GPERFTOOLS_ARCH_PATH/lib:$LD_LIBRARY_PATH
++GPERFTOOLS_VERSION=gperftools-$EBVERSIONGPERFTOOLS
++GPERFTOOLS_ARCH_PATH=$EBROOTGPERFTOOLS
+
+ #------------------------------------------------------------------------------
+diff -ru OpenFOAM-7-version-7.orig/etc/config.sh/metis OpenFOAM-7-version-7/etc/config.sh/metis
+--- OpenFOAM-7-version-7.orig/etc/config.sh/metis       2018-07-09 18:01:02.000000000 +0200
++++ OpenFOAM-7-version-7/etc/config.sh/metis    2018-08-14 11:39:06.204657280 +0200
+@@ -34,7 +34,7 @@
+ #
+ #------------------------------------------------------------------------------
+
+-export METIS_VERSION=metis-5.1.0
+-export METIS_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$METIS_VERSION
++export METIS_VERSION=metis-$EBVERSIONMETIS
++export METIS_ARCH_PATH=$EBROOTMETIS
+
+ #------------------------------------------------------------------------------
+diff -ru OpenFOAM-7-version-7.orig/etc/config.sh/mpi OpenFOAM-7-version-7/etc/config.sh/mpi
+--- OpenFOAM-7-version-7.orig/etc/config.sh/mpi 2018-07-09 18:01:02.000000000 +0200
++++ OpenFOAM-7-version-7/etc/config.sh/mpi      2018-08-14 11:45:15.876343167 +0200
+@@ -257,6 +257,9 @@
+     _foamAddPath    $MPI_ARCH_PATH/bin64
+     _foamAddLib     $MPI_ARCH_PATH/lib64
+     ;;
++EASYBUILDMPI)
++    export FOAM_MPI=mpi
++    ;;
+ *)
+     export FOAM_MPI=dummy
+     ;;
+diff -ru OpenFOAM-7-version-7.orig/etc/config.sh/paraview OpenFOAM-7-version-7/etc/config.sh/paraview
+--- OpenFOAM-7-version-7.orig/etc/config.sh/paraview    2018-07-09 18:01:02.000000000 +0200
++++ OpenFOAM-7-version-7/etc/config.sh/paraview 2018-08-14 11:48:56.859557664 +0200
+@@ -41,21 +41,6 @@
+         ) \
+         && PATH="$cleaned"
+
+-# Determine the cmake to be used
+-unset CMAKE_HOME
+-for cmake in cmake-3.2.1 cmake-2.8.12.1 cmake-2.8.8 cmake-2.8.4 cmake-2.8.3 \
+-             cmake-2.8.1 cmake-3.9.0
+-do
+-    cmake=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$cmake
+-    if [ -r $cmake ]
+-    then
+-        export CMAKE_HOME=$cmake
+-        export CMAKE_ROOT=$cmake
+-        export PATH=$CMAKE_HOME/bin:$PATH
+-        break
+-    fi
+-done
+-
+ #- ParaView version, automatically determine major version
+ #export ParaView_VERSION=4.0.1
+ #export ParaView_VERSION=4.1.0
+@@ -65,7 +50,8 @@
+ #export ParaView_VERSION=5.0.1
+ #export ParaView_VERSION=5.4.0
+ #export ParaView_VERSION=5.5.0
+-export ParaView_VERSION=5.6.3
++#export ParaView_VERSION=5.6.3
++export ParaView_VERSION=$EBVERSIONPARAVIEW
+ export ParaView_MAJOR=detect
+
+ #export ParaView_GL=system
+@@ -105,7 +91,8 @@
+ export ParaView_VERSION ParaView_MAJOR
+
+ # Set the binary and source directories
+-export ParaView_DIR=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/ParaView-$ParaView_VERSION
++#export ParaView_DIR=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/ParaView-$ParaView_VERSION
++export ParaView_DIR=$EBROOTPARAVIEW
+ paraviewSrcDir=$WM_THIRD_PARTY_DIR/ParaView-$ParaView_VERSION
+
+ # Set paths if binaries or source are present
+@@ -125,8 +111,6 @@
+     fi
+     export ParaView_LIB_DIR=$ParaView_DIR/lib$paraviewArch$paraviewLibSubDir
+
+-    export PATH=$ParaView_DIR/bin:$PATH
+-    export LD_LIBRARY_PATH=$ParaView_LIB_DIR:$LD_LIBRARY_PATH
+     export PV_PLUGIN_PATH=$FOAM_LIBBIN/paraview-$ParaView_MAJOR
+
+     if [ "$FOAM_VERBOSE" -a "$PS1" ]
+@@ -138,18 +122,6 @@
+         echo "    PV_PLUGIN_PATH       : $PV_PLUGIN_PATH"
+     fi
+
+-    # Add in python libraries if required
+-    paraviewPython=$ParaView_DIR/Utilities/VTKPythonWrapping
+-    if [ -r $paraviewPython ]
+-    then
+-        if [ "$PYTHONPATH" ]
+-        then
+-            export PYTHONPATH=$PYTHONPATH:$paraviewPython:$ParaView_LIB_DIR
+-        else
+-            export PYTHONPATH=$paraviewPython:$ParaView_LIB_DIR
+-        fi
+-    fi
+-
+     # Alias paraview to launch with mesa if necessary
+     if [ "$ParaView_GL" = mesa ]
+     then
+diff -ru OpenFOAM-7-version-7.orig/etc/config.sh/scotch OpenFOAM-7-version-7/etc/config.sh/scotch
+--- OpenFOAM-7-version-7.orig/etc/config.sh/scotch      2018-07-09 18:01:02.000000000 +0200
++++ OpenFOAM-7-version-7/etc/config.sh/scotch   2018-08-14 11:50:33.739213308 +0200
+@@ -37,7 +37,7 @@
+ #
+ #------------------------------------------------------------------------------
+
+-export SCOTCH_VERSION=scotch_6.0.9
+-export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$SCOTCH_VERSION
++export SCOTCH_VERSION=scotch_$EBVERSIONSCOTCH
++export SCOTCH_ARCH_PATH=$EBROOTSCOTCH
+
+ #------------------------------------------------------------------------------
+diff -ru OpenFOAM-7-version-7.orig/etc/config.sh/settings OpenFOAM-7-version-7/etc/config.sh/settings
+--- OpenFOAM-7-version-7.orig/etc/config.sh/settings    2018-07-09 18:01:02.000000000 +0200
++++ OpenFOAM-7-version-7/etc/config.sh/settings 2018-08-14 11:53:15.092639797 +0200
+@@ -61,11 +61,11 @@
+         64)
+             WM_ARCH=linux64
+             export WM_COMPILER_LIB_ARCH=64
+-            export WM_CC='gcc'
+-            export WM_CXX='g++'
+-            export WM_CFLAGS='-m64 -fPIC'
+-            export WM_CXXFLAGS='-m64 -fPIC -std=c++0x'
+-            export WM_LDFLAGS='-m64'
++            export WM_CC=$CC
++            export WM_CXX=$CXX
++            export WM_CFLAGS=$CFLAGS
++            export WM_CXXFLAGS=$CXXFLAGS
++            export WM_LDFLAGS=$LDFLAGS
+             ;;
+         *)
+             echo "Unknown WM_ARCH_OPTION '$WM_ARCH_OPTION', should be 32 or 64"\
+diff -ru OpenFOAM-7-version-7.orig/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-7-version-7/src/parallel/decompose/ptscotchDecomp/Make/options
+--- OpenFOAM-7-version-7.orig/src/parallel/decompose/ptscotchDecomp/Make/options        2018-07-09 18:01:02.000000000 +0200
++++ OpenFOAM-7-version-7/src/parallel/decompose/ptscotchDecomp/Make/options     2018-08-14 11:55:27.323169812 +0200
+@@ -5,14 +5,7 @@
+     $(PFLAGS) $(PINC) \
+     -I$(FOAM_SRC)/Pstream/mpi/lnInclude \
+     -I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \
+-    -I$(SCOTCH_ARCH_PATH)/include \
+-    -I/usr/include/scotch \
+     -I../decompositionMethods/lnInclude
+
+ LIB_LIBS = \
+-    -L$(SCOTCH_ARCH_PATH)/lib \
+-    -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) \
+-    -lptscotch \
+-    -lptscotcherrexit \
+-    -lscotch \
+-    -lrt
++    -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit -lscotch ${LINK_FLAGS} -lrt
+diff -ru OpenFOAM-7-version-7.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C OpenFOAM-7-version-7/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C
+--- OpenFOAM-7-version-7.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C    2018-07-09 18:01:02.000000000 +0200
++++ OpenFOAM-7-version-7/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2018-08-14 11:57:24.057754914 +0200
+@@ -31,10 +31,11 @@
+ #include "SubField.H"
+ #include "PstreamGlobals.H"
+
++#include <mpi.h>
++
+ extern "C"
+ {
+     #include <stdio.h>
+-    #include <mpi.h>
+     #include "ptscotch.h"
+ }
+
+diff -ru OpenFOAM-7-version-7.orig/src/parallel/decompose/scotchDecomp/Make/options OpenFOAM-7-version-7/src/parallel/decompose/scotchDecomp/Make/options
+--- OpenFOAM-7-version-7.orig/src/parallel/decompose/scotchDecomp/Make/options  2018-07-09 18:01:02.000000000 +0200
++++ OpenFOAM-7-version-7/src/parallel/decompose/scotchDecomp/Make/options       2018-08-14 11:58:42.345476668 +0200
+@@ -8,7 +8,6 @@
+ EXE_INC = \
+     $(PFLAGS) $(PINC) \
+     -I$(SCOTCH_ARCH_PATH)/include \
+-    -I/usr/include/scotch \
+     -I../decompositionMethods/lnInclude
+
+ LIB_LIBS = \
diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-8-foss-2020a.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-8-foss-2020a.eb
@@ -0,0 +1,39 @@
+name = 'OpenFOAM'
+version = '8'
+
+homepage = 'https://www.openfoam.org/'
+description = """OpenFOAM is a free, open source CFD software package.
+ OpenFOAM has an extensive range of features to solve anything from complex fluid flows
+ involving chemical reactions, turbulence and heat transfer,
+ to solid dynamics and electromagnetics."""
+
+toolchain = {'name': 'foss', 'version': '2020a'}
+toolchainopts = {'cstd': 'c++11'}
+
+source_urls = ['https://github.com/OpenFOAM/OpenFOAM-%(version_major)s/archive']
+sources = ['version-%(version)s.tar.gz']
+patches = [
+    'OpenFOAM-%(version)s-cleanup.patch',
+]
+checksums = [
+    '94ba11cbaaa12fbb5b356e01758df403ac8832d69da309a5d79f76f42eb008fc',  # version-8.tar.gz
+    'e3fac8049611ee109f07eb5b0ed4b1526782a21b3f12435e03529d56c8483b9f',  # OpenFOAM-8-cleanup.patch
+]
+
+dependencies = [
+    ('libreadline', '8.0'),
+    ('ncurses', '6.2'),
+    # OpenFOAM requires 64 bit METIS using 32 bit indexes (array indexes)
+    ('METIS', '5.1.0'),
+    ('SCOTCH', '6.0.9'),
+    ('CGAL', '4.14.3', '-Python-3.8.2'),
+    ('ParaView', '5.8.0', '-Python-3.8.2-mpi'),
+]
+
+builddependencies = [
+    ('Bison', '3.5.3'),
+    ('CMake', '3.16.4'),
+    ('flex', '2.6.4'),
+]
+
+moduleclass = 'cae'