{bio}[GCC/10.2.0] DosageConvertor v1.0.4

easybuild/easyconfigs/d/DosageConvertor/DosageConvertor-1.0.4-GCC-10.2.0.eb

@@ -0,0 +1,39 @@
+# Includes some material from the BEAR Software team at the University of Birmingham.
+
+easyblock = 'CMakeMake'
+
+name = 'DosageConvertor'
+version = '1.0.4'
+local_hash = 'c53a377bb6e03cd697f528cd74d97eb0c9f56e8b'
+
+homepage = 'http://genome.sph.umich.edu/wiki/DosageConvertor'
+description = """DosageConvertor is a C++ tool to convert dosage files (in VCF format) from Minimac3/4
+ to other formats such as MaCH or PLINK. Please note that this tool CANNOT handle missing values in
+ the input files and may NOT work for non-Minimac3/4 VCF files."""
+
+toolchain = {'name': 'GCC', 'version': '10.2.0'}
+
+builddependencies = [
+    ('CMake', '3.18.4')
+]
+
+dependencies = [
+    ('zlib', '1.2.11'),
+    ('libStatGen', '1.0.15'),
+]
+
+source_urls = ['https://github.com/Santy-8128/%(name)s/archive']
+sources = ['%s.tar.gz' % local_hash]
+checksums = ['3ee1f3ef23d7e7c04295a5fa43c3b59811cc8fe778f0f69c9759c2624ae3aa47']
+
+sanity_check_paths = {
+    'files': ['bin/%(name)s'],
+    'dirs': []
+}
+
+sanity_check_commands = [
+    '%%(name)s --vcfDose %%(builddir)s/%%(name)s-%s/test/TestDataImputedVCF.dose.vcf.gz --prefix output --format 1'
+    '          --info %%(builddir)s/%%(name)s-%s/test/TestDataImputedVCF.info --type plink' % (local_hash, local_hash)
+]
+
+moduleclass = 'bio'