add patch to fix missing sync in LINCS and SETTLE CUDA kernels for GROMACS 2021 versions

[branfosj]

(created using eb --new-pr)

Patch based off https://gitlab.com/gromacs/gromacs/-/merge_requests/2499 and see discussion in https://gitlab.com/gromacs/gromacs/-/issues/4393

[SebastianAchilles]

@boegelbot please test @ jsc-zen2
CORE_CNT=16

[boegelbot]

@SebastianAchilles: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=16026 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_16026 --ntasks="16" ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

• exit code: 0
• output:

Submitted batch job 1450

Test results coming soon (I hope)...

- notification for comment with ID 1211721124 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 7 out of 7 (5 easyconfigs in total)
jsczen2g1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/1568a5ae3c4fb8b6c27620170e45fa9d for a full test report.

[SebastianAchilles]

@boegelbot please test @ generoso
CORE_CNT=16

[boegelbot]

@SebastianAchilles: Request for testing this PR well received on login1

PR test command 'EB_PR=16026 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_16026 --ntasks="16" ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 9002

Test results coming soon (I hope)...

- notification for comment with ID 1212100681 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
cnx1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2690 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/66e62bc1fa5935a4da57f1ed078249db for a full test report.

[branfosj]

Test report by @branfosj
SUCCESS
Build succeeded for 12 out of 12 (5 easyconfigs in total)
bear-pg0104u09a.bear.cluster - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/34e0ccc9d71d20684bd6238623d65c5e for a full test report.

[SebastianAchilles]

lgtm

[SebastianAchilles]

Going in, thanks @branfosj!