{bio}[foss/2023a] InterProScan v5.69-101.0

easybuild/easyconfigs/i/InterProScan/InterProScan-5.69-101.0-foss-2023a.eb

@@ -0,0 +1,55 @@
+easyblock = 'Binary'
+
+name = 'InterProScan'
+version = '5.69-101.0'
+
+homepage = 'https://www.ebi.ac.uk/interpro/'
+# also https://github.com/ebi-pf-team/interproscan
+description = """InterProScan is a sequence analysis application (nucleotide and protein sequences) that combines
+ different protein signature recognition methods into one resource [code only: libraries and external binaries
+ but no data]."""
+# software_license = 'LicenseApachev2'
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+
+source_urls = ['https://ftp.ebi.ac.uk/pub/software/unix/iprscan/%(version_major)s/%(version)s/alt/']
+sources = ['interproscan-core-%(version)s.tar.gz']
+checksums = ['2dae4ec748ece57b9412518a763aed0f7d0a1fc2ac1a3937b574a06e2566b349']
+
+dependencies = [
+ ('Java', '11', '', SYSTEM),
+ ('Perl', '5.36.1'),
+ ('libgd', '2.3.3'),
+ ('Python', '3.11.3'),
+ ('PCRE', '8.45'),
+]
+# NOTE some analyses done by InterProScan require extra tools not included in the interproscan
+# distribution because of license issues.
+# Those tools are SignalP, TMHMM and Phobius.
+# To allow InterProScan to use them you have to copy or symlink their executable in the
+# corresponding %(installdir)s/bin/TOOL/VERSION/ folder.
+
+extract_sources = False
+
+# NOTE The data can be added manually afterwards with for example a symlink called *data*
+# in %(installdir)s/
+# But simpler to use the InterProScan_data-*.eb file. The regular InterProScan data package
+# does not contain the lookup_service data way too large!
+install_cmd = 'tar xfz %(namelower)s-core-%(version)s.tar.gz && '
+install_cmd += 'cd %(namelower)s-%(version)s/ && '
+install_cmd += 'find . -type d -name bin32 | xargs rm -Rf && '
+# We want the test files to validate the installation
+#install_cmd += 'rm -f test* && rm -Rf src/ && '
+install_cmd += 'rm -Rf src/ && '
+install_cmd += 'chmod -x *.jar && '
+install_cmd += 'cp -r * %(installdir)s/ && cd .. && '
+install_cmd += 'rm -Rf %(namelower)s-%(version)s/'
+
+sanity_check_paths = {
+ 'files': ['interproscan-%(version_major)s.jar', 'interproscan.sh', 'interproscan.properties'],
+ 'dirs': ['bin', 'lib'],
+}
+
+sanity_check_commands = ["interproscan.sh 2>&1 | grep 'Welcome to InterProScan-%(version)s'"]
+
+moduleclass = 'bio'