{bio}[GCCcore/13.3.0] nf-core v2.14.1, pydantic v2.9.1, pyfaidx v0.8.1.2

[Flamefire]

(created using eb --new-pr)

Requires:

• {devel,lib,tools}[GCCcore/13.3.0] pytest-workflow v2.1.0, tqdm v4.66.5, typing-extensions v4.11.0 #21423
• {lib}[GCCcore/13.3.0] GitPython v3.1.43, ISA-L v2.31.0, Markdown v3.7, ... #21424
• {lib,vis}[GCCcore/13.3.0] giflib v5.2.2, Pillow v10.4.0 #21425

[Flamefire]

Test report by @Flamefire
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
i7119 - Linux Rocky Linux 8.9 (Green Obsidian), x86_64, AMD EPYC 7702 64-Core Processor (zen2), Python 3.8.17
See https://gist.github.com/Flamefire/e2e0dca2c59d56cd944962765c01345f for a full test report.

[Flamefire]

Test report by @Flamefire
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
i7119 - Linux Rocky Linux 8.9 (Green Obsidian), x86_64, AMD EPYC 7702 64-Core Processor (zen2), Python 3.8.17
See https://gist.github.com/Flamefire/a0a6721c3c73b766d5c45e415125dcf3 for a full test report.

[SebastianAchilles]

@boegelbot please test @ jsc-zen3

[boegelbot]

@SebastianAchilles: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21426 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21426 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 4889

Test results coming soon (I hope)...

- notification for comment with ID 2357686167 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[smoors]

@boegelbot please test @ jsc-zen3

[boegelbot]

@smoors: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21426 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21426 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 4951

Test results coming soon (I hope)...

- notification for comment with ID 2379098069 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
FAILED
Build succeeded for 2 out of 4 (4 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/a65f5dcfb43bb9036d9f1531f56ae218 for a full test report.

[smoors]

error in the sed cmd for pydantic:

== 2024-09-27 12:07:08,006 run.py:260 INFO running cmd: sed -i '/Framework :': 'Pydantic/d' pyproject.toml && /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.12.3-GCCcore-13.3.0/bin/python -m pip install --prefix=/project/def-maintainers/boegelbot/rocky9/zen3/software/pydantic/2.9.1-GCCcore-13.3.0 --verbose --no-deps --ignore-installed --no-index --no-build-isolation .
== 2024-09-27 12:07:08,216 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in init): cmd "sed -i '/Framework :': 'Pydantic/d' pyproject.toml && /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.12.3-GCCcore-13.3.0/bin/python -m pip install --prefix=/project/def-maintainers/boegelbot/rocky9/zen3/software/pydantic/2.9.1-GCCcore-13.3.0 --verbose --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 1 and output:
sed: -e expression #1, char 13: unterminated address regex

[smoors]

@boegelbot please test @ jsc-zen3

[boegelbot]

@smoors: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21426 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21426 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 4954

Test results coming soon (I hope)...

- notification for comment with ID 2379242393 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/81279221de5ddee35a66a5fc32d20fcf for a full test report.

[smoors]

@boegelbot: please test @ generoso

[boegelbot]

@smoors: Request for testing this PR well received on login1

PR test command 'EB_PR=21426 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21426 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 14353

Test results coming soon (I hope)...

- notification for comment with ID 2379277352 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[Flamefire]

error in the sed cmd for pydantic:

t sneaked in while updating the checksums.

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/64fd4ad02ab7fe62b20e3b6b870628d2 for a full test report.

[smoors]

lgtm

[smoors]

Going in, thanks @Flamefire!