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eboileau committed Oct 9, 2023
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**Ribotools** can be used to generate count tables, starting from raw, trimmed reads, or existing alignments, taking into consideration Ribo-seq periodicity estimates and RNA-seq fragment length. **Ribotools** include scripts to perform translation efficiency (TE) analysis, accommodating for sample-to-sample variance, complex experimental designs, or confounding factors, and classifies features into different regulatory layers.

<p align="center">
<a href="https://ribotools.readthedocs.io/en/latest"><img alt="Ribotools" src="https://github.com/eboileau/ribotools/raw/master/docs/source/_static/ribotools-logo-light.png"></a>
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<p align="center">
<a href="https://pypi.org/project/ribotools/"><img alt="PyPI" src="https://img.shields.io/pypi/v/ribotools"></a>
<a href='https://ribotools.readthedocs.io/en/latest/?badge=latest'>
<img src='https://readthedocs.org/projects/ribotools/badge/?version=latest' alt='Documentation Status' />
</a>
</p>

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## Documentation

Consult the [user guide]() for instructions on how to install the package and detailed usage instructions.
Consult the [user guide](https://ribotools.readthedocs.io/en/latest) for instructions on how to install the package and detailed usage instructions.

## How to report issues

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