Code and data for paper


1. Create docker container using provided Dockerfile. Most convenient is to use VSCode with DevContainers extensions
2. Use jupytext to convert main.py to a notebook

>> jupytext --to ipynb main.py

3. Run the code and change the loaded data directory if desired

Data is available at https://doi.org/10.5281/zenodo.10981856

./data/

volunteer1/scan1 pancreas m0 b0/500
volunteer1/scan2 pancreas m1 b0/500
volunteer2/scan1 pancreas m0 b0/500
volunteer2/scan2 pancreas m1 b0/500
volunteer3/scan1 pancreas m0 b0/500
volunteer3/scan2 pancreas m1 b0/500
volunteer4/scan3 liver m0 b0/50/800
volunteer5/scan3 liver m0 b0/50/800