Feature: Group Naming Wizard PCA

Signed-off-by: Lorenz Gerber <lorenz.gerber@lablicate.com>

chemclipse/plugins/org.eclipse.chemclipse.xxd.process.supplier.pca.ui/src/org/eclipse/chemclipse/xxd/process/supplier/pca/ui/internal/provider/GroupNamingEditingSupport.java

@@ -0,0 +1,72 @@
+/*******************************************************************************
+ * Copyright (c) 2024 Lablicate GmbH.
+ *
+ * All rights reserved. This program and the accompanying materials
+ * are made available under the terms of the Eclipse Public License v1.0
+ * which accompanies this distribution, and is available at
+ * http://www.eclipse.org/legal/epl-v10.html
+ * 
+ * Contributors:
+ * Lorenz Gerber - initial API and implementation
+ *******************************************************************************/
+package org.eclipse.chemclipse.xxd.process.supplier.pca.ui.internal.provider;
+
+import org.eclipse.chemclipse.model.statistics.ISample;
+import org.eclipse.chemclipse.xxd.process.supplier.pca.ui.swt.SampleGroupAssignerListUI;
+import org.eclipse.jface.viewers.CellEditor;
+import org.eclipse.jface.viewers.CheckboxCellEditor;
+import org.eclipse.jface.viewers.EditingSupport;
+
+public class GroupNamingEditingSupport extends EditingSupport {
+
+ private CellEditor cellEditor;
+ private final SampleGroupAssignerListUI tableViewer;
+ private final String column;
+
+ public GroupNamingEditingSupport(SampleGroupAssignerListUI tableViewer, String column) {
+
+ super(tableViewer);
+ this.column = column;
+ if(SampleGroupAssignerLabelProvider.SELECT.equals(column)) {
+ this.cellEditor = new CheckboxCellEditor(tableViewer.getTable());
+ }
+ this.tableViewer = tableViewer;
+ }
+
+ @Override
+ protected CellEditor getCellEditor(Object element) {
+
+ return cellEditor;
+ }
+
+ @Override
+ protected boolean canEdit(Object element) {
+
+ return true;
+ }
+
+ @Override
+ protected Object getValue(Object element) {
+
+ if(element instanceof ISample sample) {
+ switch(column) {
+ case SampleGroupAssignerLabelProvider.SELECT:
+ return sample.isSelected();
+ }
+ }
+ return false;
+ }
+
+ @Override
+ protected void setValue(Object element, Object value) {
+
+ if(element instanceof ISample sample) {
+ switch(column) {
+ case SampleGroupAssignerLabelProvider.SELECT:
+ sample.setSelected((boolean)value);
+ break;
+ }
+ tableViewer.refresh();
+ }
+ }
+}

chemclipse/plugins/org.eclipse.chemclipse.xxd.process.supplier.pca.ui/src/org/eclipse/chemclipse/xxd/process/supplier/pca/ui/internal/provider/SampleGroupAssignerLabelProvider.java

@@ -0,0 +1,77 @@
+/*******************************************************************************
+ * Copyright (c) 2024 Lablicate GmbH.
+ *
+ * All rights reserved. This program and the accompanying materials
+ * are made available under the terms of the Eclipse Public License v1.0
+ * which accompanies this distribution, and is available at
+ * http://www.eclipse.org/legal/epl-v10.html
+ * 
+ * Contributors:
+ * Lorenz Gerber - initial API and implementation
+ *******************************************************************************/
+package org.eclipse.chemclipse.xxd.process.supplier.pca.ui.internal.provider;
+
+import org.eclipse.chemclipse.model.statistics.ISample;
+import org.eclipse.chemclipse.rcp.ui.icons.core.ApplicationImageFactory;
+import org.eclipse.chemclipse.rcp.ui.icons.core.IApplicationImage;
+import org.eclipse.chemclipse.rcp.ui.icons.core.IApplicationImageProvider;
+import org.eclipse.chemclipse.support.ui.provider.AbstractChemClipseLabelProvider;
+import org.eclipse.swt.graphics.Image;
+
+public class SampleGroupAssignerLabelProvider extends AbstractChemClipseLabelProvider {
+
+ public static final String SAMPLE_NAME = "Sample Name";
+ public static final String SELECT = "Select";
+ public static final String GROUP_NAME = "Group Name";
+ public static final int INDEX_COLOR = 2;
+ //
+ public static String[] TITLES = {//
+ SAMPLE_NAME, //
+ SELECT, //
+ GROUP_NAME //
+ };
+ //
+ public static int[] BOUNDS = {//
+ 300, //
+ 30, //
+ 100, //
+ };
+
+ @Override
+ public Image getColumnImage(Object element, int columnIndex) {
+
+ if(columnIndex == 0) {
+ return getImage(element);
+ } else if(columnIndex == 1) {
+ if(element instanceof ISample sample) {
+ if(sample.isSelected()) {
+ return ApplicationImageFactory.getInstance().getImage(IApplicationImage.IMAGE_SELECTED, IApplicationImageProvider.SIZE_16x16);
+ } else {
+ return ApplicationImageFactory.getInstance().getImage(IApplicationImage.IMAGE_DESELECTED, IApplicationImageProvider.SIZE_16x16);
+ }
+ }
+ }
+ return null;
+ }
+
+ @Override
+ public String getColumnText(Object element, int columnIndex) {
+
+ String text = "";
+ if(element instanceof ISample sample) {
+ //
+ switch(columnIndex) {
+ case 0:
+ text = sample.getSampleName() != null ? sample.getSampleName() : "";
+ break;
+ case 1:
+ text = ""; // Checkbox
+ break;
+ case 2:
+ text = sample.getGroupName() != null ? sample.getGroupName() : "";
+ break;
+ }
+ }
+ return text;
+ }
+}

chemclipse/plugins/org.eclipse.chemclipse.xxd.process.supplier.pca.ui/src/org/eclipse/chemclipse/xxd/process/supplier/pca/ui/internal/wizards/GroupNamingWizard.java

@@ -11,15 +11,23 @@
  *******************************************************************************/
 package org.eclipse.chemclipse.xxd.process.supplier.pca.ui.internal.wizards;
 
+import java.util.List;
+
+import org.eclipse.chemclipse.model.statistics.ISample;
+import org.eclipse.chemclipse.model.statistics.IVariable;
+import org.eclipse.chemclipse.xxd.process.supplier.pca.model.ISamplesPCA;
 import org.eclipse.jface.wizard.IWizard;
 import org.eclipse.jface.wizard.Wizard;
 
 public class GroupNamingWizard extends Wizard implements IWizard {
 
- private GroupNamingWizardPage groupNamingWizardPage = new GroupNamingWizardPage();
+ private GroupNamingWizardPage groupNamingWizardPage;
+ private ISamplesPCA<IVariable, ISample> samples;
 
- public GroupNamingWizard() {
+ public GroupNamingWizard(ISamplesPCA<IVariable, ISample> samples) {
 
+ this.groupNamingWizardPage = new GroupNamingWizardPage(samples);
+ this.samples = samples;
  }
 
  @Override
@@ -31,6 +39,10 @@ public void addPages() {
  @Override
  public boolean performFinish() {
 
+ List<ISample> groupSamples = this.groupNamingWizardPage.getGroupSamples();
+ for(int i = 0; i < groupSamples.size(); i++) {
+ samples.getSamples().get(i).setGroupName(groupSamples.get(i).getGroupName());
+ }
  return true;
  }
 }

chemclipse/plugins/org.eclipse.chemclipse.xxd.process.supplier.pca.ui/src/org/eclipse/chemclipse/xxd/process/supplier/pca/ui/internal/wizards/GroupNamingWizardPage.java

@@ -11,24 +11,170 @@
  *******************************************************************************/
 package org.eclipse.chemclipse.xxd.process.supplier.pca.ui.internal.wizards;
 
+import java.util.ArrayList;
+import java.util.List;
+import java.util.concurrent.atomic.AtomicReference;
+
+import org.eclipse.chemclipse.model.statistics.ISample;
+import org.eclipse.chemclipse.model.statistics.IVariable;
+import org.eclipse.chemclipse.xxd.process.supplier.pca.model.ISamplesPCA;
+import org.eclipse.chemclipse.xxd.process.supplier.pca.model.Sample;
+import org.eclipse.chemclipse.xxd.process.supplier.pca.ui.swt.SampleGroupAssignerListUI;
 import org.eclipse.swt.SWT;
+import org.eclipse.swt.events.SelectionAdapter;
+import org.eclipse.swt.events.SelectionEvent;
+import org.eclipse.swt.layout.GridData;
 import org.eclipse.swt.layout.GridLayout;
+import org.eclipse.swt.widgets.Button;
 import org.eclipse.swt.widgets.Composite;
+import org.eclipse.swt.widgets.Label;
+import org.eclipse.swt.widgets.Table;
+import org.eclipse.swt.widgets.Text;
 
 public class GroupNamingWizardPage extends AbstractAnalysisWizardPage {
 
- public GroupNamingWizardPage() {
+ private AtomicReference<SampleGroupAssignerListUI> sampleGroupAssignerListControl = new AtomicReference<>();
+ private ISamplesPCA<IVariable, ISample> samples;
+ private AtomicReference<Text> groupName = new AtomicReference<Text>();
+
+ public GroupNamingWizardPage(ISamplesPCA<IVariable, ISample> samples) {
 
  super("bla bla 2");
  setTitle("Group Naming Tool");
  setDescription("Tool for quickly naming/creating/assigning Groups");
+ this.samples = samples;
  }
 
  @Override
  public void createControl(Composite parent) {
 
  Composite composite = new Composite(parent, SWT.NONE);
- composite.setLayout(new GridLayout(3, false));
+ composite.setLayout(new GridLayout(1, true));
+ createToolbar(composite);
+ createSampleGroupAssignerListUI(composite);
  setControl(parent);
  }
+
+ private void createSampleGroupAssignerListUI(Composite composite) {
+
+ SampleGroupAssignerListUI sampleGroupAssignerListUI = new SampleGroupAssignerListUI(composite, SWT.BORDER | SWT.MULTI | SWT.V_SCROLL | SWT.H_SCROLL | SWT.FULL_SELECTION);
+ Table table = sampleGroupAssignerListUI.getTable();
+ table.setLayoutData(new GridData(GridData.FILL_BOTH));
+ sampleGroupAssignerListControl.set(sampleGroupAssignerListUI);
+ sampleGroupAssignerListUI.updateInput(extractSamples(samples.getSamples()));
+ }
+
+ private List<ISample> extractSamples(List<ISample> samples) {
+
+ List<ISample> groupNamingSamples = new ArrayList<ISample>();
+ for(ISample sample : samples) {
+ ISample groupNamingSample = new Sample(sample.getSampleName(), sample.getGroupName());
+ groupNamingSample.setSelected(false);
+ groupNamingSamples.add(groupNamingSample);
+ }
+ return groupNamingSamples;
+ }
+
+ private void createToolbar(Composite parent) {
+
+ Composite composite = new Composite(parent, SWT.NONE);
+ GridData gridData = new GridData(GridData.FILL_HORIZONTAL);
+ gridData.horizontalAlignment = SWT.BEGINNING;
+ composite.setLayoutData(gridData);
+ composite.setLayout(new GridLayout(5, false));
+ //
+ createButtonAssign(composite);
+ createLabel(composite, "Group Name:");
+ createGroupNameEntry(composite);
+ createButtonZeroSelection(composite);
+ createButtonInverseSelection(composite);
+ }
+
+ private Label createLabel(Composite parent, String text) {
+
+ Label label = new Label(parent, SWT.NONE);
+ label.setText(text);
+ return label;
+ }
+
+ private Button createButtonAssign(Composite parent) {
+
+ Button button = new Button(parent, SWT.PUSH);
+ button.setToolTipText("Assign Groups to selected Samples.");
+ button.setText("Assign Groups");
+ button.addSelectionListener(new SelectionAdapter() {
+
+ @Override
+ public void widgetSelected(SelectionEvent e) {
+
+ sampleGroupAssignerListControl.get().assignGroups(groupName.get().getText());
+ }
+ });
+ //
+ return button;
+ }
+
+ private void createGroupNameEntry(Composite parent) {
+
+ Text text = new Text(parent, SWT.NONE);
+ text.setToolTipText("Enter Groupname to be assigned to Samples");
+ GridData gridData = new GridData();
+ gridData.widthHint = 150;
+ text.setLayoutData(gridData);
+ groupName.set(text);
+ }
+
+ private Button createButtonZeroSelection(Composite parent) {
+
+ Button button = new Button(parent, SWT.PUSH);
+ button.setToolTipText("Unselect all.");
+ button.setText("Unselect");
+ button.addSelectionListener(new SelectionAdapter() {
+
+ @Override
+ public void widgetSelected(SelectionEvent e) {
+
+ @SuppressWarnings("unchecked")
+ List<ISample> groupNamingSamples = (List<ISample>)sampleGroupAssignerListControl.get().getInput();
+ for(ISample sample : groupNamingSamples) {
+ sample.setSelected(false);
+ }
+ sampleGroupAssignerListControl.get().updateInput(groupNamingSamples);
+ }
+ });
+ //
+ return button;
+ }
+
+ private Button createButtonInverseSelection(Composite parent) {
+
+ Button button = new Button(parent, SWT.PUSH);
+ button.setToolTipText("Inverse Select Samples.");
+ button.setText("Inverse");
+ button.addSelectionListener(new SelectionAdapter() {
+
+ @Override
+ public void widgetSelected(SelectionEvent e) {
+
+ @SuppressWarnings("unchecked")
+ List<ISample> groupNamingSamples = (List<ISample>)sampleGroupAssignerListControl.get().getInput();
+ for(ISample sample : groupNamingSamples) {
+ if(sample.isSelected()) {
+ sample.setSelected(false);
+ } else {
+ sample.setSelected(true);
+ }
+ }
+ sampleGroupAssignerListControl.get().updateInput(groupNamingSamples);
+ }
+ });
+ //
+ return button;
+ }
+
+ @SuppressWarnings("unchecked")
+ public List<ISample> getGroupSamples() {
+
+ return (List<ISample>)sampleGroupAssignerListControl.get().getInput();
+ }
 }

chemclipse/plugins/org.eclipse.chemclipse.xxd.process.supplier.pca.ui/src/org/eclipse/chemclipse/xxd/process/supplier/pca/ui/swt/AnalysisEditorUI.java

@@ -8,7 +8,7 @@
  * 
  * Contributors:
  * Philip Wenig - initial API and implementation
- * Lorenz Gerber - Opls Target selection
+ * Lorenz Gerber - Opls Target selection, Group assigner
  *******************************************************************************/
 package org.eclipse.chemclipse.xxd.process.supplier.pca.ui.swt;
 
@@ -310,13 +310,13 @@ public void performSearch(String searchText, boolean caseSensitive) {
 
  private void createNamingWizard(Composite parent) {
 
- IWizard wizard = new GroupNamingWizard();
+ IWizard wizard = new GroupNamingWizard(samples);
  BatchProcessWizardDialog wizardDialog = new BatchProcessWizardDialog(control.getShell(), wizard);
  wizardDialog.setMinimumPageSize(DEFAULT_WIDTH, DEFAULT_HEIGHT);
  //
  try {
  if(wizardDialog.open() == Window.OK) {
- // handle changes introduced in Wizard
+ updateSampleList();
  }
  } finally {
  wizard.dispose();