ecotaxa/ecotaxa_front#764: A bit more realistic test data, all tests …

…aligned.
ecotaxa · Feb 9, 2023 · 8ef9835 · 8ef9835
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diff --git a/QA/py/data/import_just_predicted/m106_mn01_n4_sml/ecotaxa_m106_mn01_n4_sml.tsv b/QA/py/data/import_just_predicted/m106_mn01_n4_sml/ecotaxa_m106_mn01_n4_sml.tsv
@@ -0,0 +1,10 @@
+object_new_field object_id object_lat object_lon object_date object_time object_link object_depth_min object_depth_max object_annotation_status object_annotation_person_name object_annotation_person_email object_annotation_date object_annotation_time object_annotation_category object_annotation_category_id img_file_name img_rank object_by object_width object_height object_area object_mean object_major object_minor object_feret object_area_exc object_thickr object_esd object_elongation object_range object_meanpos object_centroids object_cv object_sr object_perimareaexc object_feretareaexc object_perimferet object_perimmajor object_circex object_cdexc object_kurt_mean object_skew_mean object_convperim_perim object_convarea_area object_symetrieh_area object_symetriev_area object_nb1_area object_nb2_area object_nb3_area object_nb1_range object_nb2_range object_nb3_range object_median_mean object_median_mean_range object_skeleton_area sample_id sample_tot_vol sample_dataportal_descriptor sample_ship sample_samplinggear sample_volconc sample_comment process_id acq_sub_part process_software process_start_date process_start_time process_analysed_color_channel process_background_method process_nb_images process_rolling process_pixel process_upper process_gamma_value process_vignette_color process_esd_min process_esd_max process_lut_offset process_lut_slope process_remove_objects_on_sides process_stop_n_images process_scale process_stop_after_m_objects process_nb_of_rawfile_images_in_folder process_grey_auto_adjust acq_id acq_instrument acq_cell_type acq_magnification
+[f] [t] [f] [f] [t] [t] [t] [f] [f] [t] [t] [t] [t] [t] [t] [t] [t] [t] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t]
+1 m106_mn04_n1_sml_409 18 -24.4166666666667 20140420 420 600 1000 predicted Admin4test me@home.fr 20151111 153100 t001 85012 m106_mn04_n1_sml_409.jpg 10262 46 94 516 241.039993286133 50.0999984741211 13.1000003814697 102.599998474121 4 2 m106_mn04_n4_sml NaN meteor net 13.125 xx zooprocess_m106_mn04_n1_sml 2 zooprocess_pid_to_ecotaxa_7.23_2017/03/10 20150829 2243 rolling_ball 2 20 10.6 245 2 b&w_no_background 200 1000 0 1 yes 1 2 generic_m106_mn04_n1_sml epson 200-500 1
+2 m106_mn04_n1_sml_821 18 -24.4166666666667 20140420 420 600 1000 predicted Taxo Finder taxo.finder@gmail.com 20151111 153100 Oncaeidae 78418 m106_mn04_n1_sml_409.jpg 0 9811 65 54 1401 202.039993286133 70.1999969482422 25.3999996185303 73.1999969482422 0 2.5 m106_mn04_n4_sml NaN meteor net 13.125 xx zooprocess_m106_mn04_n1_sml 4 zooprocess_pid_to_ecotaxa_7.23_2017/03/10 20150829 2243 rolling_ball 2 20 10.6 245 2 b&w_no_background 200 1000 0 1 yes 1 2 generic_m106_mn04_n1_sml epson 200-500 1
+3 m106_mn04_n1_sml_822 18 -24.4166666666667 20140420 420 600 1000 predicted Taxo Finder taxo.finder@gmail.com 20151111 153100 detritus 84963 m106_mn04_n1_sml_409.jpg 0 9866 33 51 733 200.25 48.7999992370605 19.1000003814697 51.5999984741211 0 2.82399988174438 m106_mn04_n4_sml NaN meteor net 13.125 xx zooprocess_m106_mn04_n1_sml 8 zooprocess_pid_to_ecotaxa_7.23_2017/03/10 20150829 2243 rolling_ball 2 20 10.6 245 2 b&w_no_background 200 1000 0 1 yes 1 2 generic_m106_mn04_n1_sml epson 200-500 1
+4 m106_mn04_n1_sml_850 18 -24.4166666666667 20140420 420 600 1000 predicted Taxo Finder taxo.finder@gmail.com 20151111 153100 Oncaeidae 78418 m106_mn04_n1_sml_409.jpg 0 10787 42 47 1583 222.789993286133 48.9000015258789 41.2000007629395 53.0999984741211 100 2.64299988746643 m106_mn04_n5_sml foo meteor net 13.125 xx zooprocess_m106_mn04_n1_sml 8 zooprocess_pid_to_ecotaxa_7.23_2017/03/10 20150829 2243 rolling_ball 2 20 10.6 245 2 b&w_no_background 200 1000 0 1 yes 1 2 generic_m106_mn04_n12_sml epson 200-500 1
+5 m106_mn04_n1_sml_851 18 -24.4166666666667 20140420 420 600 1000 predicted Taxo Finder taxo.finder@gmail.com 20151111 153100 detritus 84963 m106_mn04_n1_sml_409.jpg 0 10823 47 69 1511 192.240005493164 60.7000007629395 31.7000007629395 70.5999984741211 3 2 m106_mn04_n5_sml foo meteor net 13.125 xx zooprocess_m106_mn04_n1_sml 8 zooprocess_pid_to_ecotaxa_7.23_2017/03/10 20150829 2243 rolling_ball 2 20 10.6 245 2 b&w_no_background 200 1000 0 1 yes 1 2 generic_m106_mn04_n12_sml epson 200-500 1
+6 m106_mn04_n1_sml_852 18 -24.4166666666667 20140420 420 600 1000 predicted Taxo Finder taxo.finder@gmail.com 20151111 153100 Oncaeidae 78418 m106_mn04_n1_sml_409.jpg 0 10787 42 47 1583 222.789993286133 48.9000015258789 41.2000007629395 53.0999984741211 100 2.64299988746643 m106_mn04_n6_sml 2000 meteor net 13.125 xx zooprocess_m106_mn04_n1_sml hi zooprocess_pid_to_ecotaxa_7.23_2017/03/10 20150829 2243 rolling_ball 2 20 10.6 245 2 b&w_no_background 200 1000 0 1 yes 1 2 generic_m106_mn04_n13_sml epson 200-500 1
+7 m106_mn04_n1_sml_853 18 -24.4166666666667 20140420 420 600 1000 predicted Taxo Finder taxo.finder@gmail.com 20151111 153100 detritus 84963 m106_mn04_n1_sml_409.jpg 0 10787 42 47 1583 222.789993286133 48.9000015258789 41.2000007629395 53.0999984741211 100 2.64299988746643 m106_mn04_n6_sml 2000 meteor net 13.125 xx zooprocess_m106_mn04_n1_sml NaN zooprocess_pid_to_ecotaxa_7.23_2017/03/10 20150829 2243 rolling_ball 2 20 10.6 245 2 b&w_no_background 200 1000 0 1 yes 1 2 generic_m106_mn04_n13_sml epson 200-500 1
+8 m106_mn04_n1_sml_854 18 -24.4166666666667 20140420 420 600 1000 predicted Taxo Finder taxo.finder@gmail.com 20151111 153100 Cyclopoida 45072 m106_mn04_n1_sml_409.jpg 0 10787 42 47 1583 222.789993286133 48.9000015258789 41.2000007629395 53.0999984741211 100 2.64299988746643 m106_mn04_n6_sml 2000 meteor net 13.125 xx zooprocess_m106_mn04_n1_sml b zooprocess_pid_to_ecotaxa_7.23_2017/03/10 20150829 2243 rolling_ball 2 20 10.6 245 2 b&w_no_background 200 1000 0 1 yes 1 2 generic_m106_mn04_n13_sml epson 200-500 1
diff --git a/QA/py/data/import_just_predicted/m106_mn01_n4_sml/m106_mn04_n1_sml_409.jpg b/QA/py/data/import_just_predicted/m106_mn01_n4_sml/m106_mn04_n1_sml_409.jpg
diff --git a/QA/py/data/import_test_plus/m106_mn01_n3_sml/ecotaxa_m106_mn01_n3_sml.tsv b/QA/py/data/import_test_plus/m106_mn01_n3_sml/ecotaxa_m106_mn01_n3_sml.tsv
@@ -2,5 +2,5 @@ object_id object_extra object_lat object_lon object_date object_time object_link
 [t] [t] [f] [f] [t] [t] [t] [f] [f] [t] [t] [t] [t] [t] [t] [t] [t] [t] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [f] [t] [t] [t] [t] [t] [t] [t] [t] [f] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [t] [f]
 m106_mn01_n3_sml_1 Extra1 18.0 -24.4166666666667 20140420 420 300.0 600.0 predicted Elizandro Rodriguez elizandro.rodrigues05@gmail.com 20151111 153100 detritus 84963 m106_mn01_n3_sml_1.png 14.0 25.0 26.0 413.0 175.529998779297 24.7000007629395 21.2999992370605 27.2999992370605 0.0 2.0 m106_mn01_n3_sml 2014_m106_sml meteor m106_mn01_n3_sml net 9.75 xx zooprocess_m106_mn01_n3_sml zooprocess_pid_to_ecotaxa_7.23_2017/03/10 20150829 2256 rolling_ball 2 20 10.6 245 2 b&w_no_background 200 1000 0 1 yes 1 2 generic_m106_mn01_n3_sml epson 200-500 1 
 m106_mn01_n3_sml_1081 Extra2 18.0 -24.4166666666667 20140420 420 300.0 600.0 predicted Elizandro Rodriguez elizandro.rodrigues05@gmail.com 20151111 153100 detritus 84963 m106_mn01_n3_sml_1081.jpg 9940.0 56.0 38.0 929.0 222.75 44.2000007629395 26.7999992370605 58.2000007629395 9.0 1.86000001430511 m106_mn01_n3_sml 2014_m106_sml meteor m106_mn01_n3_sml net 9.75 xx zooprocess_m106_mn01_n3_sml zooprocess_pid_to_ecotaxa_7.23_2017/03/10 20150829 2256 rolling_ball 2 20 10.6 245 2 b&w_no_background 200 1000 0 1 yes 1 2 generic_m106_mn01_n3_sml epson 200-500 1 
-m106_mn01_n3_sml_1111 Extra3 18.0 -24.4166666666667 20140421 420 300.0 600.0 predicted Elizandro Rodriguez elizandro.rodrigues05@gmail.com 20151111 153100 egg<other 85078 m106_mn01_n3_sml_1111.jpg 10961.0 23.0 28.0 490.0 210.800003051758 27.0 23.1000003814697 29.2000007629395 0.0 2.0 1.860 m106_mn01_n3_sml 2014_m106_sml meteor m106_mn01_n3_sml net 9.75 xx zooprocess_m106_mn01_n3_sml zooprocess_pid_to_ecotaxa_7.23_2017/03/10 20150829 2256 rolling_ball 2 20 10.6 245 2 b&w_no_background 200 1000 0 1 yes 1 2 generic_m106_mn01_n3_sml epson 200-500 1 
-m106_mn01_n3_sml_1111 Extra3 18.0 -24.4166666666667 20140421 420 300.0 600.0 predicted Elizandro Rodriguez elizandro.rodrigues05@gmail.com 20151111 153100 egg<other 85078 m106_mn01_n3_sml_1111.jpg 1 10961.0 23.0 28.0 490.0 210.800003051758 27.0 23.1000003814697 29.2000007629395 0.0 2.0 m106_mn01_n3_sml 2014_m106_sml meteor m106_mn01_n3_sml net 9.75 xx zooprocess_m106_mn01_n3_sml zooprocess_pid_to_ecotaxa_7.23_2017/03/10 20150829 2256 rolling_ball 2 20 10.6 245 2 b&w_no_background 200 1000 0 1 yes 1 2 generic_m106_mn01_n3_sml epson 200-500 1 
+m106_mn01_n3_sml_1111 Extra3 18.0 -24.4166666666667 20140421 420 300.0 600.0 predicted Elizandro Rodriguez elizandro.rodrigues05@gmail.com 20151111 153100 small<egg 92731 m106_mn01_n3_sml_1111.jpg 10961.0 23.0 28.0 490.0 210.800003051758 27.0 23.1000003814697 29.2000007629395 0.0 2.0 1.860 m106_mn01_n3_sml 2014_m106_sml meteor m106_mn01_n3_sml net 9.75 xx zooprocess_m106_mn01_n3_sml zooprocess_pid_to_ecotaxa_7.23_2017/03/10 20150829 2256 rolling_ball 2 20 10.6 245 2 b&w_no_background 200 1000 0 1 yes 1 2 generic_m106_mn01_n3_sml epson 200-500 1
+m106_mn01_n3_sml_1111 Extra3 18.0 -24.4166666666667 20140421 420 300.0 600.0 predicted Elizandro Rodriguez elizandro.rodrigues05@gmail.com 20151111 153100 small<egg 92731 m106_mn01_n3_sml_1111.jpg 1 10961.0 23.0 28.0 490.0 210.800003051758 27.0 23.1000003814697 29.2000007629395 0.0 2.0 m106_mn01_n3_sml 2014_m106_sml meteor m106_mn01_n3_sml net 9.75 xx zooprocess_m106_mn01_n3_sml zooprocess_pid_to_ecotaxa_7.23_2017/03/10 20150829 2256 rolling_ball 2 20 10.6 245 2 b&w_no_background 200 1000 0 1 yes 1 2 generic_m106_mn01_n3_sml epson 200-500 1
diff --git a/QA/py/data/ref_exports/abundances_by_sample/ref.tsv b/QA/py/data/ref_exports/abundances_by_sample/ref.tsv
@@ -4,16 +4,19 @@ m106_mn01_n1_sml Oncaeidae 2
 m106_mn01_n1_sml detritus 0
 m106_mn01_n1_sml egg<other 0
 m106_mn01_n1_sml other<living 1
+m106_mn01_n1_sml small<egg 0
 m106_mn01_n1_sml t001 1
 m106_mn01_n2_sml Cyclopoida 0
 m106_mn01_n2_sml Oncaeidae 0
 m106_mn01_n2_sml detritus 2
 m106_mn01_n2_sml egg<other 1
 m106_mn01_n2_sml other<living 0
+m106_mn01_n2_sml small<egg 0
 m106_mn01_n2_sml t001 0
 m106_mn01_n3_sml Cyclopoida 0
 m106_mn01_n3_sml Oncaeidae 0
 m106_mn01_n3_sml detritus 2
-m106_mn01_n3_sml egg<other 1
+m106_mn01_n3_sml egg<other 0
 m106_mn01_n3_sml other<living 0
+m106_mn01_n3_sml small<egg 1
 m106_mn01_n3_sml t001 0
diff --git a/QA/py/data/ref_exports/abundances_by_sample_filtered_on_sample/ref.tsv b/QA/py/data/ref_exports/abundances_by_sample_filtered_on_sample/ref.tsv
@@ -2,12 +2,12 @@ sampleid taxonid count
 m106_mn01_n1_sml Cyclopoida 1
 m106_mn01_n1_sml Oncaeidae 2
 m106_mn01_n1_sml detritus 0
-m106_mn01_n1_sml egg<other 0
 m106_mn01_n1_sml other<living 1
+m106_mn01_n1_sml small<egg 0
 m106_mn01_n1_sml t001 1
 m106_mn01_n3_sml Cyclopoida 0
 m106_mn01_n3_sml Oncaeidae 0
 m106_mn01_n3_sml detritus 2
-m106_mn01_n3_sml egg<other 1
 m106_mn01_n3_sml other<living 0
+m106_mn01_n3_sml small<egg 1
 m106_mn01_n3_sml t001 0
diff --git a/QA/py/data/ref_exports/abundances_by_subsample/ref.tsv b/QA/py/data/ref_exports/abundances_by_subsample/ref.tsv
@@ -4,16 +4,19 @@ m106_mn01_n1_sml generic_m106_mn01_n1_sml Oncaeidae 2
 m106_mn01_n1_sml generic_m106_mn01_n1_sml detritus 0
 m106_mn01_n1_sml generic_m106_mn01_n1_sml egg<other 0
 m106_mn01_n1_sml generic_m106_mn01_n1_sml other<living 1
+m106_mn01_n1_sml generic_m106_mn01_n1_sml small<egg 0
 m106_mn01_n1_sml generic_m106_mn01_n1_sml t001 1
 m106_mn01_n2_sml generic_m106_mn01_n2_sml Cyclopoida 0
 m106_mn01_n2_sml generic_m106_mn01_n2_sml Oncaeidae 0
 m106_mn01_n2_sml generic_m106_mn01_n2_sml detritus 2
 m106_mn01_n2_sml generic_m106_mn01_n2_sml egg<other 1
 m106_mn01_n2_sml generic_m106_mn01_n2_sml other<living 0
+m106_mn01_n2_sml generic_m106_mn01_n2_sml small<egg 0
 m106_mn01_n2_sml generic_m106_mn01_n2_sml t001 0
 m106_mn01_n3_sml generic_m106_mn01_n3_sml Cyclopoida 0
 m106_mn01_n3_sml generic_m106_mn01_n3_sml Oncaeidae 0
 m106_mn01_n3_sml generic_m106_mn01_n3_sml detritus 2
-m106_mn01_n3_sml generic_m106_mn01_n3_sml egg<other 1
+m106_mn01_n3_sml generic_m106_mn01_n3_sml egg<other 0
 m106_mn01_n3_sml generic_m106_mn01_n3_sml other<living 0
+m106_mn01_n3_sml generic_m106_mn01_n3_sml small<egg 1
 m106_mn01_n3_sml generic_m106_mn01_n3_sml t001 0
diff --git a/QA/py/data/ref_exports/abundances_whole_project/ref.tsv b/QA/py/data/ref_exports/abundances_whole_project/ref.tsv
@@ -2,6 +2,7 @@ taxonid count
 Cyclopoida 1
 Oncaeidae 2
 detritus 4
-egg<other 2
+egg<other 1
 other<living 1
+small<egg 1
 t001 1
diff --git a/QA/py/data/ref_exports/bak_all_images/m106_mn01_n3_sml/ecotaxa_m106_mn01_n3_sml.tsv b/QA/py/data/ref_exports/bak_all_images/m106_mn01_n3_sml/ecotaxa_m106_mn01_n3_sml.tsv
@@ -2,5 +2,5 @@
 "[t]" "[t]" "[t]" "[f]" "[f]" "[t]" "[t]" "[t]" "[f]" "[f]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[f]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]" "[t]"
 "m106_mn01_n3_sml_1.png" 0 "m106_mn01_n3_sml_1" 18.0 -24.4166666666667 "20140420" "042000" "" 300.0 600.0 "predicted" "Application Administrator" "administrator" "20151111" "153100" "detritus" 84963 14.0 25.0 26.0 413.0 175.529998779297 24.7000007629395 21.2999992370605 27.2999992370605 0.0 2.0 "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "Extra1" "m106_mn01_n3_sml" "" "2014_m106_sml" "meteor" "m106_mn01_n3_sml" "net" "9.75" "xx" "" "zooprocess_m106_mn01_n3_sml" "zooprocess_pid_to_ecotaxa_7.23_2017/03/10" "20150829" "2256" "" "rolling_ball" "2" "20" "10.6" "245" "2" "b&w_no_background" "200" "1000" "0" "1" "yes" "" "1" "" "2" "" "generic_m106_mn01_n3_sml" "epson" "200-500" "1" ""
 "m106_mn01_n3_sml_1081.jpg" 0 "m106_mn01_n3_sml_1081" 18.0 -24.4166666666667 "20140420" "042000" "" 300.0 600.0 "predicted" "Application Administrator" "administrator" "20151111" "153100" "detritus" 84963 9940.0 56.0 38.0 929.0 222.75 44.2000007629395 26.7999992370605 58.2000007629395 9.0 1.86000001430511 "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "Extra2" "m106_mn01_n3_sml" "" "2014_m106_sml" "meteor" "m106_mn01_n3_sml" "net" "9.75" "xx" "" "zooprocess_m106_mn01_n3_sml" "zooprocess_pid_to_ecotaxa_7.23_2017/03/10" "20150829" "2256" "" "rolling_ball" "2" "20" "10.6" "245" "2" "b&w_no_background" "200" "1000" "0" "1" "yes" "" "1" "" "2" "" "generic_m106_mn01_n3_sml" "epson" "200-500" "1" ""
-"m106_mn01_n3_sml_1111.jpg" 0 "m106_mn01_n3_sml_1111" 18.0 -24.4166666666667 "20140421" "042000" "" 300.0 600.0 "predicted" "Application Administrator" "administrator" "20151111" "153100" "egg<other" 85078 10961.0 23.0 28.0 490.0 210.800003051758 27.0 23.1000003814697 29.2000007629395 0.0 2.0 1.86 "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "Extra3" "m106_mn01_n3_sml" "" "2014_m106_sml" "meteor" "m106_mn01_n3_sml" "net" "9.75" "xx" "" "zooprocess_m106_mn01_n3_sml" "zooprocess_pid_to_ecotaxa_7.23_2017/03/10" "20150829" "2256" "" "rolling_ball" "2" "20" "10.6" "245" "2" "b&w_no_background" "200" "1000" "0" "1" "yes" "" "1" "" "2" "" "generic_m106_mn01_n3_sml" "epson" "200-500" "1" ""
-"1/m106_mn01_n3_sml_1111.jpg" 1 "m106_mn01_n3_sml_1111" 18.0 -24.4166666666667 "20140421" "042000" "" 300.0 600.0 "predicted" "Application Administrator" "administrator" "20151111" "153100" "egg<other" 85078 10961.0 23.0 28.0 490.0 210.800003051758 27.0 23.1000003814697 29.2000007629395 0.0 2.0 1.86 "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "" "Extra3" "m106_mn01_n3_sml" "" "2014_m106_sml" "meteor" "m106_mn01_n3_sml" "net" "9.75" "xx" "" "zooprocess_m106_mn01_n3_sml" "zooprocess_pid_to_ecotaxa_7.23_2017/03/10" "20150829" "2256" "" "rolling_ball" "2" "20" "10.6" "245" "2" "b&w_no_background" "200" "1000" "0" "1" "yes" "" "1" "" "2" "" "generic_m106_mn01_n3_sml" "epson" "200-500" "1" ""
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