Fix typo and move flexiguide to debug (#77) (pinellolab#438)

* Change flexiguide output to debug level

* Fix typo in fastp merged output file name

CRISPResso2/CRISPRessoCORE.py

@@ -1914,7 +1914,7 @@ def get_prime_editing_guides(this_amp_seq, this_amp_name, ref0_seq, prime_edited
                             this_guide_plot_cut_points.append(False)
                         else:
                             this_guide_plot_cut_points.append(True)
-                info('Added %d guides with flexible matching\n\tOriginal flexiguides: %s\n\tFound guides: %s\n\tMismatch locations: %s'%(flexi_guide_count, str(args.flexiguide_seq.split(",")), str(flexi_guides), str(flexi_guide_mismatches)), {'percent_complete': 7})
+                debug('Added %d guides with flexible matching\n\tOriginal flexiguides: %s\n\tFound guides: %s\n\tMismatch locations: %s'%(flexi_guide_count, str(args.flexiguide_seq.split(",")), str(flexi_guides), str(flexi_guide_mismatches)), {'percent_complete': 7})
 
             if args.prime_editing_pegRNA_extension_seq:
                 nicking_qw_center = int(args.quantification_window_center.split(",")[0])
@@ -2382,7 +2382,7 @@ def get_prime_editing_guides(this_amp_seq, this_amp_name, ref0_seq, prime_edited
             processed_output_filename = output_forward_filename
 
         elif args.fastq_r1 != '' and args.fastq_r2 != '':#paired end reads
-            processed_output_filename = _jp('oet.extendedFrags.fastq.gz')
+            processed_output_filename = _jp('out.extendedFrags.fastq.gz')
             not_combined_1_filename = _jp('out.notCombined_1.fastq.gz')
             not_combined_2_filename = _jp('out.notCombined_2.fastq.gz')
             check_fastp()