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eduardklap · Jun 14, 2024 · 1e3b634 · 1e3b634
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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-91921357
+219bd9ce
diff --git a/index-meca.zip b/index-meca.zip
diff --git a/index.docx b/index.docx
diff --git a/index.html b/index.html
@@ -1232,7 +1232,7 @@ <h2 class="unnumbered anchored" data-anchor-id="references">References</h2>
 });
 </script>
 </div> <!-- /content -->
-<script>var lightboxQuarto = GLightbox({"descPosition":"bottom","openEffect":"zoom","loop":false,"closeEffect":"zoom","selector":".lightbox"});
+<script>var lightboxQuarto = GLightbox({"selector":".lightbox","descPosition":"bottom","loop":false,"closeEffect":"zoom","openEffect":"zoom"});
 (function() {
   let previousOnload = window.onload;
   window.onload = () => {

diff --git a/index.pdf b/index.pdf
diff --git a/notebooks/figures-cohens_d.embed.ipynb b/notebooks/figures-cohens_d.embed.ipynb
@@ -10,7 +10,7 @@
     "\n",
     "Load libraries to produce figures:"
    ],
-   "id": "99b4ce6b-ccd8-494c-85f0-ce796ac7eadf"
+   "id": "c8c5ae1a-049d-4ba7-8b6b-e214df0a3dc0"
   },
   {
    "cell_type": "code",
@@ -26,15 +26,15 @@
     "install_github(\"eduardklap/neuroUp\")\n",
     "library(neuroUp)"
    ],
-   "id": "39dda903-7832-4df5-9792-2c2c528a45b7"
+   "id": "20f4b7df-f78a-4e87-a2bc-6c842e1e9b19"
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "Set seed and create Figure 1A for the Feedback task DLPFC ROI:"
    ],
-   "id": "9a52a41d-97f3-466e-9559-091463668217"
+   "id": "18a17175-b786-4799-bb38-b41eab0f42c1"
   },
   {
    "cell_type": "code",
@@ -53,15 +53,15 @@
     "                    k = 1000, \n",
     "                    name = \"A. Feedback DLPFC\")"
    ],
-   "id": "d76ba40e-9d92-4fb7-b6a5-4904d47ae2d7"
+   "id": "edde1c7f-8b05-4fa3-8002-e209aab52073"
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "Set seed and create Figure 1B for the Gambling task NAcc ROI:"
    ],
-   "id": "a33e126a-cb83-4b79-a1f7-5ed17375c45a"
+   "id": "1953c893-b857-4703-b2a5-f99cde60361f"
   },
   {
    "cell_type": "code",
@@ -80,15 +80,15 @@
     "                    k = 1000, \n",
     "                    name = \"B. Gambling NAcc\")"
    ],
-   "id": "7879146c-f1d5-4752-bb04-eb6c7f4a7b20"
+   "id": "116c26aa-b188-4b79-84a1-c9dca49ba881"
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "Set seed and create Figure 1C for the Self-evaluations task mPFC ROI:"
    ],
-   "id": "df4f1cec-1b67-4787-ab68-670bcf203ad1"
+   "id": "3ce076aa-8f39-43c5-bb47-0b15526d4cd2"
   },
   {
    "cell_type": "code",
@@ -107,15 +107,15 @@
     "                    k = 10, \n",
     "                    name = \"C. Self-evaluations mPFC\")"
    ],
-   "id": "e69b400a-3daa-45eb-b0cd-227275eeae0d"
+   "id": "638f7885-a22c-4d14-8870-f515eedf9f55"
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "Set seed and create Figure 1D for the Gaining for self task NAcc ROI:"
    ],
-   "id": "3c47cc39-91fd-44a0-b2b0-92ea03630856"
+   "id": "f96c3532-1c1f-4323-8663-3fac23368099"
   },
   {
    "cell_type": "code",
@@ -134,15 +134,15 @@
     "                    k = 10, \n",
     "                    name = \"D. Gaining self NAcc\")"
    ],
-   "id": "50866952-f59a-4511-817e-6cbfa37449c3"
+   "id": "4a889862-64a2-4f33-86ab-6bb67449ed4f"
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "Combine figures 1A-D in one figure for Cohen’s d estimates:"
    ],
-   "id": "57972b62-518a-4fde-b357-dfb1ea25002b"
+   "id": "afe7d778-02cb-424d-9234-cdbf4b7c016b"
   },
   {
    "cell_type": "code",
@@ -152,15 +152,15 @@
    "source": [
     "Fig1a$fig_cohens_d + Fig1b$fig_cohens_d + Fig1c$fig_cohens_d + Fig1d$fig_cohens_d"
    ],
-   "id": "d35a4027-fbde-41d3-a3c0-4510a619dc9f"
+   "id": "8712bc43-aecf-4b12-b6f5-a5fb77113e05"
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "Combine figures 1A-D in one figure for the proportion of intervals not containing the value 0:"
    ],
-   "id": "280c5b0f-51a6-4a7c-b604-aab1f15ab353"
+   "id": "5d797a2b-19ce-4f83-8b25-bdbbbec2f9a2"
   },
   {
    "cell_type": "code",
@@ -170,15 +170,15 @@
    "source": [
     "Fig1a$fig_d_nozero + Fig1b$fig_d_nozero + Fig1c$fig_d_nozero + Fig1d$fig_d_nozero"
    ],
-   "id": "5a077719-907d-4355-83c7-e589df53dcba"
+   "id": "43c73a1f-28a2-483a-863b-2a46e90201ff"
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "Extract numbers to make table 2:"
    ],
-   "id": "397c37a7-91ab-4a7e-8043-99ae54c5bef6"
+   "id": "94602f6e-ccba-49b3-b06e-65406566b9cd"
   },
   {
    "cell_type": "code",
@@ -198,7 +198,7 @@
     "\n",
     "# use numbers to make a table in text"
    ],
-   "id": "3952293b-50bc-4301-8a40-bc9dfa35b2e7"
+   "id": "603a88bd-8060-45bf-b755-7064816ab2cf"
   }
  ],
  "nbformat": 4,

diff --git a/notebooks/figures-cohens_d.out.ipynb b/notebooks/figures-cohens_d.out.ipynb
@@ -10,7 +10,7 @@
     "\n",
     "Load libraries to produce figures:"
    ],
-   "id": "23b92bee-e778-44eb-a066-e036041e210f"
+   "id": "da60015a-9dfb-4464-8c80-d2b7374ea185"
   },
   {
    "cell_type": "code",
@@ -26,15 +26,15 @@
     "install_github(\"eduardklap/neuroUp\")\n",
     "library(neuroUp)\n"
    ],
-   "id": "2ad1067a-a4fa-4a87-ad16-3c89bc864635"
+   "id": "7428517c-b478-4f4a-b24f-44d1532fd069"
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "Set seed and create Figure 1A for the Feedback task DLPFC ROI:"
    ],
-   "id": "2ef3364b-9442-420e-befd-8195c94da4ec"
+   "id": "59857528-e6c7-4331-9ab5-70331ec5a76a"
   },
   {
    "cell_type": "code",
@@ -53,15 +53,15 @@
     "                    k = 1000, \n",
     "                    name = \"A. Feedback DLPFC\")\n"
    ],
-   "id": "58e6edbc-232b-44d4-8134-65af069fccec"
+   "id": "cd506db6-2990-49a6-b63a-6bf8faf2389a"
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "Set seed and create Figure 1B for the Gambling task NAcc ROI:"
    ],
-   "id": "8ada4d44-4d20-4580-8468-907e4c8b0a51"
+   "id": "9b348e4f-5560-40f8-aa8f-0cf364342975"
   },
   {
    "cell_type": "code",
@@ -80,15 +80,15 @@
     "                    k = 1000, \n",
     "                    name = \"B. Gambling NAcc\")\n"
    ],
-   "id": "bb317fe7-13e1-4260-8328-bda526e8e0e8"
+   "id": "e74b16d6-443b-41b0-9bf9-9e9f5a759d9c"
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "Set seed and create Figure 1C for the Self-evaluations task mPFC ROI:"
    ],
-   "id": "aa44a301-e6da-480e-87e1-536a7a880633"
+   "id": "095af600-ca39-4379-849a-66373cdc60a6"
   },
   {
    "cell_type": "code",
@@ -107,15 +107,15 @@
     "                    k = 10, \n",
     "                    name = \"C. Self-evaluations mPFC\")\n"
    ],
-   "id": "147ea126-5c9c-4998-a736-5ee703247178"
+   "id": "45de1e11-0ccb-4a76-8524-8930d26a774e"
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "Set seed and create Figure 1D for the Gaining for self task NAcc ROI:"
    ],
-   "id": "e854ab0c-a3b7-4224-a132-39308e5f782c"
+   "id": "4b861be8-6359-4ebd-9d91-9b5a4a7551ce"
   },
   {
    "cell_type": "code",
@@ -134,15 +134,15 @@
     "                    k = 10, \n",
     "                    name = \"D. Gaining self NAcc\")\n"
    ],
-   "id": "ee18fbda-fd55-44dc-b13e-f6a561efde9e"
+   "id": "a76d6956-1d20-4061-9cde-59a73a51c0cb"
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "Combine figures 1A-D in one figure for Cohen’s d estimates:"
    ],
-   "id": "69a0c26b-e82c-4257-9db2-502f09cc89ff"
+   "id": "fd45e6bf-8482-4301-984a-9af2f89fb81e"
   },
   {
    "cell_type": "code",
@@ -152,15 +152,15 @@
    "source": [
     "Fig1a$fig_cohens_d + Fig1b$fig_cohens_d + Fig1c$fig_cohens_d + Fig1d$fig_cohens_d\n"
    ],
-   "id": "df939e60-5a8d-4a91-a3db-ec5503a4f570"
+   "id": "c2a67d8c-94d7-494e-9e4b-decb896f2e42"
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "Combine figures 1A-D in one figure for the proportion of intervals not containing the value 0:"
    ],
-   "id": "b50bf67b-1449-4f6f-885e-89afb8f3f44c"
+   "id": "b89530f7-2cfc-46bb-bf33-6b90a4a1d8a5"
   },
   {
    "cell_type": "code",
@@ -170,15 +170,15 @@
    "source": [
     "Fig1a$fig_d_nozero + Fig1b$fig_d_nozero + Fig1c$fig_d_nozero + Fig1d$fig_d_nozero\n"
    ],
-   "id": "fc2fea63-e827-4a4c-bf40-bcf8ee5fa33c"
+   "id": "01b02f8d-9991-4db5-9afe-49ded3e3d68d"
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "Extract numbers to make table 2:"
    ],
-   "id": "bbc08906-5827-42f6-b218-f4a01e1172a6"
+   "id": "f7f23c60-b43a-4911-842e-799ed0f8af3c"
   },
   {
    "cell_type": "code",
@@ -198,7 +198,7 @@
     "\n",
     "# use numbers to make a table in text\n"
    ],
-   "id": "4129db2c-284c-4714-a3c6-4320b1282735"
+   "id": "53fdd481-da22-4028-b070-435d39572498"
   }
  ],
  "nbformat": 4,