docker-galaxy-pyclone

Overview

docker-galaxy-pyclone is a project that integrates the PyClone-VI tool with Galaxy Docker.

Features

• Clonal Evolution Analysis: Analyze clonal evolution in cancer samples.
• Cluster Prevalence Plotting: Visualize cluster prevalence over samples.
• Docker Integration: Easily deploy and run the tool in a Docker container.

Requirements

• Docker

Installation

1. Clone the repository:

   git clone https://github.com/yourusername/docker-galaxy-pyclone.git
   cd docker-galaxy-pyclone

2. Build the Docker image:

   docker build -t galaxy-pyclone .

Configuration

Set the following environment variables to configure the Galaxy instance and PyClone-VI tool:

export GALAXY_URL='http://your-galaxy-instance-url'
export PYLONE_API_KEY='your-pyclone-api-key'
export PYLONE_DATA_PATH='/path/to/your/data'

Usage

1. Run the Docker container:

   docker run -p 8081:8081 -e GALAXY_URL -e PYLONE_API_KEY -e PYLONE_DATA_PATH galaxy-pyclone

2. Access the Galaxy instance at http://localhost:8081.