cleaning

.Rbuildignore

@@ -19,5 +19,6 @@
 ^vignettes/parametrization/*$
 ^cran-comments\.md$
 ^figures/*$
+^man/figures/*$
 ^CRAN-SUBMISSION$
 ^LICENSE\.md$

R/defaultControl.R

@@ -80,8 +80,8 @@
 #' \item{\code{multiLayerBalance [= FALSE]}: Flag to indicate multiple canopy energy balance. If \code{FALSE}, canopy is considered a single layer for energy balance.}
 #' \item{\code{sapFluidityVariation [= TRUE]}: Flag to indicate that temperature affects sap fluidity (and indirectly plant conductance).}
 #' \item{\code{TPhase_gmin [= 37.5]}: Temperature for transition phase of gmin.}
-#' \item{\code{Q10_1_gmin [= 1.2]}: Temperature dependance of gmin when T ≤ TPhase.}
-#' \item{\code{Q10_2_gmin [= 4.8]}: Temperature dependance of gmin when T > TPhase.}
+#' \item{\code{Q10_1_gmin [= 1.2]}: Temperature dependance of gmin when T less than or equal to TPhase.}
+#' \item{\code{Q10_2_gmin [= 4.8]}: Temperature dependance of gmin when T greater than TPhase.}
 #' \item{\code{taper [= TRUE]}: Whether taper of xylem conduits is accounted for when calculating aboveground stem conductance from xylem conductivity.}
 #' \item{\code{thermalCapacityLAI [= 1000000]}: Thermal canopy capacitance per LAI unit.}
 #' \item{\code{rootRadialConductance [= 4]}: Radial conductance in roots (mmol·s-1·m-2·MPa-1).}

src/inner_sureau.cpp

@@ -882,7 +882,7 @@ void innerSureau(List x, List input, List output, int n, double tstep,
  NumericVector fluxSoilToStem_mm(kSoil.size(), 0.0); //Cummulative flow
  List network_n;
 
- double Agsum, Ansum;
+ double Agsum = 0.0, Ansum = 0.0;
  while ((!regulationWellComputed || !cavitationWellComputed) && (nwhilecomp<nsmalltimesteps.size())) { //# LOOP TO TRY DIFFERENT TIME STEPS
  network_n = clone(network); // # initial value of WBveg
  // List WBsoil_n = clone(WBsoil); // # initial value of WBsoil