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Macro: Oxygen cannot be a leaving group in a chemical reaction #3551

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Zhirnoff opened this issue Nov 8, 2023 · 1 comment · Fixed by #3575
Closed

Macro: Oxygen cannot be a leaving group in a chemical reaction #3551

Zhirnoff opened this issue Nov 8, 2023 · 1 comment · Fixed by #3575
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@ivan-arkhipov-epam
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Macromolecules Priority: Medium
Milestone
Macromolecules Mi...

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@Zhirnoff
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Zhirnoff commented Nov 8, 2023 •
edited by y-holik
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Steps to Reproduce

  1. Switch to Macromolecules mode
  2. Add Peptide and RNA (or CHEM) monomer on canvas (ex.: Peptide - 3-sulfoalanine; RNA - Phosphate; CHEM - Azide)
  3. Bond placed monomers using Bond Tool
  4. Look at leaving group in appeared modal window

Actual behavior
Oxygen(O) shows up as leaving group in chemical reaction

Expected behavior
Hydroxyl group(OH) should show up as a leaving group in a chemical reaction

Screenshots
Screenshot 2023-11-15 at 9 09 53 PM

Desktop (please complete the following information):

  • OS: Windows 10
  • Browser Chrome
  • Version 112.0.5615.138 (Official Build) (64-bit)

Ketcher version
Version 2.15.0-rc.4
@Zhirnoff Zhirnoff added this to the Macromolecules Milestone 3 milestone Nov 8, 2023
@ivan-arkhipov-epam ivan-arkhipov-epam linked a pull request Nov 15, 2023 that will close this issue
#3551 - macro oxygen cannot be a leaving group in a chemical reaction #3575
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rrodionov91 added a commit that referenced this issue Nov 23, 2023
@ivan-arkhipov-epam @rrodionov91
#3551 - macro oxygen cannot be a leaving group in a chemical reaction (…
90344de 
…#3575)

* Replaced O with OH in MonomerConnection modal

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Co-authored-by: Roman Rodionov <roman_rodionov@epam.com>
@Zhirnoff
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Tested.

@github-project-automation github-project-automation bot moved this to Done in Ketcher Aug 27, 2024
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@ivan-arkhipov-epam ivan-arkhipov-epam

Labels
Macromolecules Priority: Medium
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Ketcher
Status: Done
Macromolecules Milestone 3
Status: Done
Milestone
Macromolecules Milestone 3
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Successfully merging a pull request may close this issue.

#3551 - macro oxygen cannot be a leaving group in a chemical reaction epam/ketcher
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@rrodionov91 @AlexeyGirin @ivan-arkhipov-epam @Zhirnoff