epam · NataliaLoginova · Oct 18, 2024 · Oct 17, 2024 · Oct 17, 2024
diff --git a/ketcher-autotests/README.md b/ketcher-autotests/README.md
@@ -143,6 +143,7 @@ Run this command in the directory "ketcher-autotests"
 - `npm run docker:test file_name:N` run specific test in a file (N - line on which test starts)
 - `npm run report` show report
 - `npm run docker:update` update all snapshots
+- `npm run docker:update file_name:N` update specific test in a file (N - line on which test starts)
 - `npm run docker:update:test -- "test_title"` update only 1 snapshot with test_title
 
 ### Known issues

diff --git a/...e-ACS--8d70e--and-it-should-be-save-to-CDXML-specification-1-chromium-linux.png b/...e-ACS--8d70e--and-it-should-be-save-to-CDXML-specification-1-chromium-linux.png
diff --git a/...e-ACS--e8e44--and-it-should-be-save-to-CDXML-specification-2-chromium-linux.png b/...e-ACS--e8e44--and-it-should-be-save-to-CDXML-specification-2-chromium-linux.png
diff --git a/...ied-cl-aab59-ut-and-it-should-be-save-to-CML-specification-2-chromium-linux.png b/...ied-cl-aab59-ut-and-it-should-be-save-to-CML-specification-2-chromium-linux.png
diff --git a/...ied-cl-f919a-ut-and-it-should-be-save-to-CML-specification-1-chromium-linux.png b/...ied-cl-f919a-ut-and-it-should-be-save-to-CML-specification-1-chromium-linux.png
diff --git a/...click-on-layout-and-it-should-be-save-to-KET-specification-1-chromium-linux.png b/...click-on-layout-and-it-should-be-save-to-KET-specification-1-chromium-linux.png
diff --git a/...applied-click-on-layout-and-it-should-be-save-to-MOL-v2000-1-chromium-linux.png b/...applied-click-on-layout-and-it-should-be-save-to-MOL-v2000-1-chromium-linux.png
diff --git a/...applied-click-on-layout-and-it-should-be-save-to-MOL-v2000-2-chromium-linux.png b/...applied-click-on-layout-and-it-should-be-save-to-MOL-v2000-2-chromium-linux.png
diff --git a/...applied-click-on-layout-and-it-should-be-save-to-MOL-v3000-1-chromium-linux.png b/...applied-click-on-layout-and-it-should-be-save-to-MOL-v3000-1-chromium-linux.png
diff --git a/...applied-click-on-layout-and-it-should-be-save-to-MOL-v3000-2-chromium-linux.png b/...applied-click-on-layout-and-it-should-be-save-to-MOL-v3000-2-chromium-linux.png
diff --git a/...ng-is-applied-click-on-layout-and-it-should-be-save-to-PNG-1-chromium-linux.png b/...ng-is-applied-click-on-layout-and-it-should-be-save-to-PNG-1-chromium-linux.png
diff --git a/...ng-is-applied-click-on-layout-and-it-should-be-save-to-PNG-2-chromium-linux.png b/...ng-is-applied-click-on-layout-and-it-should-be-save-to-PNG-2-chromium-linux.png
diff --git a/...ons-Th-844b9-ck-on-layout-and-it-should-be-save-to-RXN3000-2-chromium-linux.png b/...ons-Th-844b9-ck-on-layout-and-it-should-be-save-to-RXN3000-2-chromium-linux.png
diff --git a/...ons-Th-98b0e-ck-on-layout-and-it-should-be-save-to-RXN2000-2-chromium-linux.png b/...ons-Th-98b0e-ck-on-layout-and-it-should-be-save-to-RXN2000-2-chromium-linux.png
diff --git a/...ons-Th-b88ca-ck-on-layout-and-it-should-be-save-to-RXN3000-1-chromium-linux.png b/...ons-Th-b88ca-ck-on-layout-and-it-should-be-save-to-RXN3000-1-chromium-linux.png
diff --git a/...ons-Th-c5130-ck-on-layout-and-it-should-be-save-to-RXN2000-1-chromium-linux.png b/...ons-Th-c5130-ck-on-layout-and-it-should-be-save-to-RXN2000-1-chromium-linux.png
diff --git a/...ied-click-on-layout-and-it-should-be-save-to-sdf-2000-file-1-chromium-linux.png b/...ied-click-on-layout-and-it-should-be-save-to-sdf-2000-file-1-chromium-linux.png
diff --git a/...ied-click-on-layout-and-it-should-be-save-to-sdf-2000-file-2-chromium-linux.png b/...ied-click-on-layout-and-it-should-be-save-to-sdf-2000-file-2-chromium-linux.png
diff --git a/...ied-click-on-layout-and-it-should-be-save-to-sdf-3000-file-1-chromium-linux.png b/...ied-click-on-layout-and-it-should-be-save-to-sdf-3000-file-1-chromium-linux.png
diff --git a/...ied-click-on-layout-and-it-should-be-save-to-sdf-3000-file-2-chromium-linux.png b/...ied-click-on-layout-and-it-should-be-save-to-sdf-3000-file-2-chromium-linux.png
diff --git a/...ng-is-applied-click-on-layout-and-it-should-be-save-to-SVG-1-chromium-linux.png b/...ng-is-applied-click-on-layout-and-it-should-be-save-to-SVG-1-chromium-linux.png
diff --git a/...ng-is-applied-click-on-layout-and-it-should-be-save-to-SVG-2-chromium-linux.png b/...ng-is-applied-click-on-layout-and-it-should-be-save-to-SVG-2-chromium-linux.png
diff --git a/ketcher-autotests/tests/Macromolecule-editor/RNA-Builder/rna-library.spec.ts b/ketcher-autotests/tests/Macromolecule-editor/RNA-Builder/rna-library.spec.ts
@@ -1718,31 +1718,23 @@ test.describe('RNA Library', () => {
       testDescription: "1. Search 'J' ambiguous peptide",
       SearchString: 'J',
       ResultMonomerLocationTab: MonomerLocationTabs.PEPTIDES,
-      shouldFail: true,
-      issueNumber: 'https://github.com/epam/ketcher/issues/5564',
     },
     {
       testDescription:
         "2. Search 'Leucine' as component of ambiguous peptide (should be J ambiguous monomer)",
       SearchString: 'Leucine',
       ResultMonomerLocationTab: MonomerLocationTabs.PEPTIDES,
-      shouldFail: true,
-      issueNumber: 'https://github.com/epam/ketcher/issues/5564',
     },
     {
       testDescription: "3. Search 'W' ambiguous DNA and RNA bases",
       SearchString: 'W',
       ResultMonomerLocationTab: MonomerLocationTabs.BASES,
-      shouldFail: true,
-      issueNumber: 'https://github.com/epam/ketcher/issues/5564',
     },
     {
       testDescription:
         "4. Search 'Thymine'  as component of ambiguous DNA base",
       SearchString: 'Thymine',
       ResultMonomerLocationTab: MonomerLocationTabs.BASES,
-      shouldFail: true,
-      issueNumber: 'https://github.com/epam/ketcher/issues/5564',
     },
   ];
 

diff --git a/...ary-Search-ambiguous-monomers-1-Search-J-ambiguous-peptide-1-chromium-linux.png b/...ary-Search-ambiguous-monomers-1-Search-J-ambiguous-peptide-1-chromium-linux.png
diff --git a/...rs-2-Sea-984f0-guous-peptide-should-be-J-ambiguous-monomer-1-chromium-linux.png b/...rs-2-Sea-984f0-guous-peptide-should-be-J-ambiguous-monomer-1-chromium-linux.png
diff --git a/...-ambiguous-monomers-3-Search-W-ambiguous-DNA-and-RNA-bases-1-chromium-linux.png b/...-ambiguous-monomers-3-Search-W-ambiguous-DNA-and-RNA-bases-1-chromium-linux.png
diff --git a/...nomers-4-Search-Thymine-as-component-of-ambiguous-DNA-base-1-chromium-linux.png b/...nomers-4-Search-Thymine-as-component-of-ambiguous-DNA-base-1-chromium-linux.png
diff --git a/...ettings-Verify-ACS-Style-button-and-setting-after-clicking-2-chromium-linux.png b/...ettings-Verify-ACS-Style-button-and-setting-after-clicking-2-chromium-linux.png
diff --git a/...ettings-Verify-ACS-Style-button-and-setting-after-clicking-3-chromium-linux.png b/...ettings-Verify-ACS-Style-button-and-setting-after-clicking-3-chromium-linux.png
diff --git a/...gs-after-clicking-ACS-Style-button-and-after-that-on-Reset-1-chromium-linux.png b/...gs-after-clicking-ACS-Style-button-and-after-that-on-Reset-1-chromium-linux.png
diff --git a/...gs-after-clicking-ACS-Style-button-and-after-that-on-Reset-2-chromium-linux.png b/...gs-after-clicking-ACS-Style-button-and-after-that-on-Reset-2-chromium-linux.png
diff --git a/...gs-after-clicking-ACS-Style-button-and-after-that-on-Reset-3-chromium-linux.png b/...gs-after-clicking-ACS-Style-button-and-after-that-on-Reset-3-chromium-linux.png
diff --git a/...gs-after-clicking-ACS-Style-button-and-after-that-on-Reset-4-chromium-linux.png b/...gs-after-clicking-ACS-Style-button-and-after-that-on-Reset-4-chromium-linux.png
diff --git a/ketcher-autotests/tests/test-data/CDXML/layout-with-dif-elements-acs-style.cdxml b/ketcher-autotests/tests/test-data/CDXML/layout-with-dif-elements-acs-style.cdxml
@@ -18,107 +18,107 @@
     </colortable>
     <page HeightPages="1" WidthPages="1">
         <fragment id="4">
-            <n id="5" Element="8" NumHydrogens="2" p="167.102234 239.250000">
-                <t p="167.102234 239.250000" LabelJustification="Left">
+            <n id="5" Element="8" NumHydrogens="2" p="645.312012 503.684235">
+                <t p="645.312012 503.684235" LabelJustification="Left">
                     <s font="3" size="10" face="96">OH</s>
                     <s font="3" size="10" face="32">2</s>
                 </t>
             </n>
         </fragment>
         <fragment id="6">
-            <n id="7" Element="8" NumHydrogens="2" p="215.302231 239.250000">
-                <t p="215.302231 239.250000" LabelJustification="Left">
+            <n id="7" Element="8" NumHydrogens="2" p="696.978638 503.684235">
+                <t p="696.978638 503.684235" LabelJustification="Left">
                     <s font="3" size="10" face="96">OH</s>
                     <s font="3" size="10" face="32">2</s>
                 </t>
             </n>
         </fragment>
         <fragment id="8">
-            <n id="9" Element="7" NumHydrogens="3" p="263.502258 239.250000">
-                <t p="263.502258 239.250000" LabelJustification="Left">
+            <n id="9" Element="7" NumHydrogens="3" p="748.645386 503.684235">
+                <t p="748.645386 503.684235" LabelJustification="Left">
                     <s font="3" size="10" face="96">NH</s>
                     <s font="3" size="10" face="32">3</s>
                 </t>
             </n>
         </fragment>
         <fragment id="10">
-            <n id="11" Element="7" NumHydrogens="3" p="311.702240 239.250000">
-                <t p="311.702240 239.250000" LabelJustification="Left">
+            <n id="11" Element="7" NumHydrogens="3" p="800.312073 503.684235">
+                <t p="800.312073 503.684235" LabelJustification="Left">
                     <s font="3" size="10" face="96">NH</s>
                     <s font="3" size="10" face="32">3</s>
                 </t>
             </n>
         </fragment>
         <fragment id="12">
-            <n id="13" Element="1" p="445.063721 222.649994">
-                <t p="445.063721 222.649994" LabelJustification="Left">
+            <n id="13" Element="1" p="940.606934 485.350861">
+                <t p="940.606934 485.350861" LabelJustification="Left">
                     <s font="3" size="10" face="96">H</s>
                 </t>
             </n>
         </fragment>
         <fragment id="14">
-            <n id="15" Element="1" p="476.663696 222.649994">
-                <t p="476.663696 222.649994" LabelJustification="Left">
+            <n id="15" Element="1" p="973.940308 485.350861">
+                <t p="973.940308 485.350861" LabelJustification="Left">
                     <s font="3" size="10" face="96">H</s>
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             </n>
         </fragment>
         <fragment id="16">
-            <n id="17" Element="9" NumHydrogens="1" p="509.863647 239.250000">
-                <t p="509.863647 239.250000" LabelJustification="Left">
+            <n id="17" Element="9" NumHydrogens="1" p="1010.606934 503.684235">
+                <t p="1010.606934 503.684235" LabelJustification="Left">
                     <s font="3" size="10" face="96">FH</s>
                 </t>
             </n>
         </fragment>
         <fragment id="18">
-            <n id="19" Element="9" NumHydrogens="1" p="558.063599 239.250000">
-                <t p="558.063599 239.250000" LabelJustification="Left">
+            <n id="19" Element="9" NumHydrogens="1" p="1062.273560 503.684235">
+                <t p="1062.273560 503.684235" LabelJustification="Left">
                     <s font="3" size="10" face="96">FH</s>
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             </n>
         </fragment>
         <fragment id="20">
-            <n id="21" Element="9" NumHydrogens="1" p="606.263550 239.250000">
-                <t p="606.263550 239.250000" LabelJustification="Left">
+            <n id="21" Element="9" NumHydrogens="1" p="1113.940186 503.684235">
+                <t p="1113.940186 503.684235" LabelJustification="Left">
                     <s font="3" size="10" face="96">FH</s>
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         </fragment>
         <fragment id="22">
-            <n id="23" Element="9" NumHydrogens="1" p="654.463440 239.250000">
-                <t p="654.463440 239.250000" LabelJustification="Left">
+            <n id="23" Element="9" NumHydrogens="1" p="1165.606812 503.684235">
+                <t p="1165.606812 503.684235" LabelJustification="Left">
                     <s font="3" size="10" face="96">FH</s>
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             </n>
         </fragment>
         <fragment id="24">
-            <n id="25" Element="35" NumHydrogens="0" p="385.882996 209.250000">
-                <t p="385.882996 209.250000" LabelJustification="Left">
+            <n id="25" Element="35" NumHydrogens="0" p="877.959534 473.684204">
+                <t p="877.959534 473.684204" LabelJustification="Left">
                     <s font="3" size="10" face="96">Br</s>
                 </t>
             </n>
-            <n id="26" Element="35" NumHydrogens="0" p="359.902252 254.250015">
-                <t p="359.902252 254.250015" LabelJustification="Left">
+            <n id="26" Element="35" NumHydrogens="0" p="851.978760 518.684204">
+                <t p="851.978760 518.684204" LabelJustification="Left">
                     <s font="3" size="10" face="96">Br</s>
                 </t>
             </n>
-            <n id="27" Element="35" NumHydrogens="0" p="359.902252 224.250000">
-                <t p="359.902252 224.250000" LabelJustification="Left">
+            <n id="27" Element="35" NumHydrogens="0" p="851.978760 488.684235">
+                <t p="851.978760 488.684235" LabelJustification="Left">
                     <s font="3" size="10" face="96">Br</s>
                 </t>
             </n>
-            <n id="28" Element="35" NumHydrogens="0" p="385.882996 269.250000">
-                <t p="385.882996 269.250000" LabelJustification="Left">
+            <n id="28" Element="35" NumHydrogens="0" p="877.959534 533.684204">
+                <t p="877.959534 533.684204" LabelJustification="Left">
                     <s font="3" size="10" face="96">Br</s>
                 </t>
             </n>
-            <n id="29" Element="35" NumHydrogens="0" p="411.863739 224.250015">
-                <t p="411.863739 224.250015" LabelJustification="Left">
+            <n id="29" Element="35" NumHydrogens="0" p="903.940247 488.684235">
+                <t p="903.940247 488.684235" LabelJustification="Left">
                     <s font="3" size="10" face="96">Br</s>
                 </t>
             </n>
-            <n id="30" Element="35" NumHydrogens="0" p="411.863739 254.250015">
-                <t p="411.863739 254.250015" LabelJustification="Left">
+            <n id="30" Element="35" NumHydrogens="0" p="903.940247 518.684204">
+                <t p="903.940247 518.684204" LabelJustification="Left">
                     <s font="3" size="10" face="96">Br</s>
                 </t>
             </n>
@@ -130,22 +130,22 @@
             <b id="67" B="26" E="27"/>
         </fragment>
         <fragment id="31">
-            <n id="32" p="717.663330 226.259628"/>
-            <n id="33" p="702.663391 252.240372"/>
-            <n id="34" p="732.663391 252.240372"/>
+            <n id="32" p="1232.273438 490.693817"/>
+            <n id="33" p="1217.273438 516.674622"/>
+            <n id="34" p="1247.273438 516.674622"/>
             <b id="68" B="32" E="33"/>
             <b id="69" B="33" E="34"/>
             <b id="70" B="34" E="32"/>
         </fragment>
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-        <graphic id="38" BoundingBox="191.202240 243.000015 191.202240 235.500000" GraphicType="Symbol" SymbolType="Plus"/>
-        <graphic id="41" BoundingBox="239.402237 243.000015 239.402237 235.500000" GraphicType="Symbol" SymbolType="Plus"/>
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-        <graphic id="47" BoundingBox="335.802246 243.000015 335.802246 235.500000" GraphicType="Symbol" SymbolType="Plus"/>
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         <scheme>
             <step ReactionStepReactants="4 6 8 10 24" ReactionStepProducts="16 18 20 22 31" ReactionStepObjectsAboveArrow="12 14" ReactionStepArrows="35"/>
         </scheme>

diff --git a/ketcher-autotests/tests/test-data/CML/layout-with-dif-elements-acs-style.cml b/ketcher-autotests/tests/test-data/CML/layout-with-dif-elements-acs-style.cml
@@ -4,32 +4,32 @@
 <reactantList>
 <molecule>
     <atomArray>
-        <atom id="a0" elementType="O" x2="5.57007" y2="-7.975"/>
+        <atom id="a0" elementType="O" x2="21.5104" y2="-16.7895"/>
     </atomArray>
 </molecule>
 <molecule>
     <atomArray>
-        <atom id="a0" elementType="O" x2="7.17674" y2="-7.975"/>
+        <atom id="a0" elementType="O" x2="23.2326" y2="-16.7895"/>
     </atomArray>
 </molecule>
 <molecule>
     <atomArray>
-        <atom id="a0" elementType="N" x2="8.78341" y2="-7.975"/>
+        <atom id="a0" elementType="N" x2="24.9548" y2="-16.7895"/>
     </atomArray>
 </molecule>
 <molecule>
     <atomArray>
-        <atom id="a0" elementType="N" x2="10.3901" y2="-7.975"/>
+        <atom id="a0" elementType="N" x2="26.6771" y2="-16.7895"/>
     </atomArray>
 </molecule>
 <molecule>
     <atomArray>
-        <atom id="a0" elementType="Br" x2="12.8628" y2="-6.975"/>
-        <atom id="a1" elementType="Br" x2="11.9967" y2="-8.475"/>
-        <atom id="a2" elementType="Br" x2="11.9967" y2="-7.475"/>
-        <atom id="a3" elementType="Br" x2="12.8628" y2="-8.975"/>
-        <atom id="a4" elementType="Br" x2="13.7288" y2="-7.475"/>
-        <atom id="a5" elementType="Br" x2="13.7288" y2="-8.475"/>
+        <atom id="a0" elementType="Br" x2="29.2653" y2="-15.7895"/>
+        <atom id="a1" elementType="Br" x2="28.3993" y2="-17.2895"/>
+        <atom id="a2" elementType="Br" x2="28.3993" y2="-16.2895"/>
+        <atom id="a3" elementType="Br" x2="29.2653" y2="-17.7895"/>
+        <atom id="a4" elementType="Br" x2="30.1313" y2="-16.2895"/>
+        <atom id="a5" elementType="Br" x2="30.1313" y2="-17.2895"/>
     </atomArray>
     <bondArray>
         <bond atomRefs2="a2 a0" order="2"/>
@@ -44,29 +44,29 @@
 <productList>
 <molecule>
     <atomArray>
-        <atom id="a0" elementType="F" x2="16.9955" y2="-7.975"/>
+        <atom id="a0" elementType="F" x2="33.6869" y2="-16.7895"/>
     </atomArray>
 </molecule>
 <molecule>
     <atomArray>
-        <atom id="a0" elementType="F" x2="18.6021" y2="-7.975"/>
+        <atom id="a0" elementType="F" x2="35.4091" y2="-16.7895"/>
     </atomArray>
 </molecule>
 <molecule>
     <atomArray>
-        <atom id="a0" elementType="F" x2="20.2088" y2="-7.975"/>
+        <atom id="a0" elementType="F" x2="37.1313" y2="-16.7895"/>
     </atomArray>
 </molecule>
 <molecule>
     <atomArray>
-        <atom id="a0" elementType="F" x2="21.8154" y2="-7.975"/>
+        <atom id="a0" elementType="F" x2="38.8536" y2="-16.7895"/>
     </atomArray>
 </molecule>
 <molecule>
     <atomArray>
-        <atom id="a0" elementType="C" x2="23.9221" y2="-7.54199"/>
-        <atom id="a1" elementType="C" x2="23.4221" y2="-8.40801"/>
-        <atom id="a2" elementType="C" x2="24.4221" y2="-8.40801"/>
+        <atom id="a0" elementType="C" x2="41.0758" y2="-16.3565"/>
+        <atom id="a1" elementType="C" x2="40.5758" y2="-17.2225"/>
+        <atom id="a2" elementType="C" x2="41.5758" y2="-17.2225"/>
     </atomArray>
     <bondArray>
         <bond atomRefs2="a0 a1" order="1"/>
@@ -78,12 +78,12 @@
 <spectatorList>
 <molecule>
     <atomArray>
-        <atom id="a0" elementType="H" x2="14.8355" y2="-7.42167"/>
+        <atom id="a0" elementType="H" x2="31.3536" y2="-16.1784"/>
     </atomArray>
 </molecule>
 <molecule>
     <atomArray>
-        <atom id="a0" elementType="H" x2="15.8888" y2="-7.42167"/>
+        <atom id="a0" elementType="H" x2="32.4647" y2="-16.1784"/>
     </atomArray>
 </molecule>
 </spectatorList>