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Bump indigo to 1.24.0 #132

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3 changes: 2 additions & 1 deletion rst/download/bingo.rst
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Expand Up @@ -15,7 +15,7 @@ Latest release
.. toctree::
:maxdepth: 1

bingo/bingo-1.23.0.rst
bingo/bingo-1.24.0.rst


Older releases
Expand All @@ -24,6 +24,7 @@ Older releases
.. toctree::
:maxdepth: 1

bingo/bingo-1.23.0.rst
bingo/bingo-1.22.0.rst
bingo/bingo-1.21.0.rst
bingo/bingo-1.20.0.rst
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45 changes: 45 additions & 0 deletions rst/download/bingo/bingo-1.24.0.rst
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Bingo 1.24.0
------------

The changelog is available `on this page <../../indigo/release-notes/indigo-1.24.0.html>`__

.. list-table::
:header-rows: 1
:stub-columns: 1
:widths: 28 24 24 24

* -
- |image0| Linux
- |image1| Windows
- |image2| Mac OS
* - Oracle
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-oracle-linux-x86_64.zip>`__
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-oracle-windows-msvc-x86_64.zip>`__
- binaries upon request.
* - PostgreSQL 15
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-15-linux-x86_64.zip>`__
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-15-windows-x86_64.zip>`__
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-15-macos-x86_64.zip>`__
* - PostgreSQL 14
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-14-linux-x86_64.zip>`__
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-14-windows-x86_64.zip>`__
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-14-macos-x86_64.zip>`__
* - PostgreSQL 13
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-13-linux-x86_64.zip>`__
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-13-windows-x86_64.zip>`__
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-13-macos-x86_64.zip>`__
* - PostgreSQL 12
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-12-linux-x86_64.zip>`__
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-12-windows-x86_64.zip>`__
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-12-macos-x86_64.zip>`__
* - Microsoft SQL Server
- \-
- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-sqlserver-windows-latest-x86_64.zip>`__
- \-

`Source code on GitHub <http://github.com/epam/indigo>`__


.. |image0| image:: ../../assets/Linux.png
.. |image1| image:: ../../assets/Windows.png
.. |image2| image:: ../../assets/AppleSZ.png
3 changes: 2 additions & 1 deletion rst/download/indigo.rst
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Expand Up @@ -15,14 +15,15 @@ Latest release
.. toctree::
:maxdepth: 1

indigo/indigo-1.23.0.rst
indigo/indigo-1.24.0.rst

Older releases
--------------

.. toctree::
:maxdepth: 1

indigo/indigo-1.23.0.rst
indigo/indigo-1.22.0.rst
indigo/indigo-1.21.0.rst
indigo/indigo-1.20.0.rst
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98 changes: 98 additions & 0 deletions rst/download/indigo/indigo-1.24.0.rst
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.. toctree::
:hidden:
:includehidden:

../../indigo/release-notes/index.rst


Indigo 1.24.0
-------------

Language Bindings
~~~~~~~~~~~~~~~~~

.. list-table::
:header-rows: 0
:stub-columns: 1

* - |p-icon| Python
- `indigo-python.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-python.zip>`__
* - |j-icon| Java
- `indigo-java.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-java.zip>`__
* - |c-icon| .NET
- `indigo-dotnet.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-dotnet.zip>`__
* - |n-icon| Native Libraries in one archive
- `indigo-native-shared-libs.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-native-shared-libs.zip>`__


Platform/CPU Bindings
~~~~~~~~~~~~~~~~~~~~~

.. list-table::
:header-rows: 1
:stub-columns: 1

* -
- |image0| Linux
- |image1| Windows
- |image2| Mac OS
* - |n-icon| Native Libraries x64
- `indigo-libs-linux-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-libs-linux-x86_64.zip>`__
- `indigo-libs-windows-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-libs-windows-x86_64.zip>`__
- `indigo-libs-macos-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-libs-macos-x86_64.zip>`__
* -
-
- `indigo-libs-windows-mingw-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-libs-windows-mingw-x86_64.zip>`__
-
* - |n-icon| Native Libraries ARM64
- `indigo-libs-linux-aarch64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-libs-linux-aarch64.zip>`__
- \-
- `indigo-libs-macos-aarch64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-libs-macos-aarch64.zip>`__
* - |n-icon| Native Libraries i386
- \-
- `indigo-libs-windows-i386.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-libs-windows-i386.zip>`__
- \-
* - |n-icon| Utilities x64
- `indigo-utils-linux-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-utils-linux-x86_64.zip>`__
- `indigo-utils-windows-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-utils-windows-x86_64.zip>`__
- `indigo-utils-macos-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-utils-macos-x86_64.zip>`__

Source code
~~~~~~~~~~~

`Source code zip <https://github.com/epam/Indigo/archive/indigo-1.24.0.zip>`__

`Repository on GitHub <https://github.com/epam/Indigo>`__


NuGet Repository
~~~~~~~~~~~~~~~~

Indigo .NET packages available at `Nuget <https://www.nuget.org/packages/Indigo.Net/>`__

Just add ``Indigo.Net`` as a dependency into the project.

PyPi package
~~~~~~~~~~~~

Indigo Python SDK can be found at `PyPi <https://pypi.org/project/epam.indigo/>`__

One can install the Indigo library using *pip* utility


.. code-block:: xml

pip install epam.indigo



.. |image0| image:: ../../assets/Linux.png
.. |image1| image:: ../../assets/Windows.png
.. |image2| image:: ../../assets/AppleSZ.png
.. |image3| image:: ../../assets/globe.png
.. |p-icon| image:: ../../assets/indigo/python-icon.png
.. |j-icon| image:: ../../assets/indigo/java-icon.png
.. |c-icon| image:: ../../assets/indigo/csharp-icon.png
.. |n-icon| image:: ../../assets/indigo/native-icon.png
.. |w-icon| image:: ../../assets/indigo/wasm-icon.png
1 change: 1 addition & 0 deletions rst/indigo/release-notes/index.rst
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Expand Up @@ -7,6 +7,7 @@ Contents:
.. toctree::
:maxdepth: 2

indigo-1.24.0
indigo-1.23.0
indigo-1.22.0
indigo-1.21.0
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34 changes: 34 additions & 0 deletions rst/indigo/release-notes/indigo-1.24.0.md
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# Indigo 1.24.0
Released 2024-10-04

## Features
* [2096](https://github.com/epam/Indigo/issues/2096) Support retrosynthetic arrows - PNG/SVG rendering
* [2097](https://github.com/epam/Indigo/issues/2097) Add retrosynthetic arrow import/export for cdx/cdxml formats
* [2031](https://github.com/epam/Indigo/issues/2031) Build a data structure for a reaction tree
* [1619](https://github.com/epam/Indigo/issues/1619) Import/export of variant monomers from IDT
* [2052](https://github.com/epam/Indigo/issues/2052) Position pathway reaction on canvas
* [2015](https://github.com/epam/Indigo/issues/2015) Import/Export of variant monomers from Fasta/Sequence
* [2028](https://github.com/epam/Indigo/issues/2028) PNG image support in CDX/CDXML
* [2128](https://github.com/epam/Indigo/issues/2128) Add Multi-tail Arrows to Pathway Reactions Loaded from RDF
* [2188](https://github.com/epam/Indigo/issues/2188) HELM 2 support: variant monomers
* [2189](https://github.com/epam/Indigo/issues/2189) HELM 2 support: support for SMILES

## Bugfixes
* [2232](https://github.com/epam/Indigo/issues/2232) System replace arrows of diffrent types with Open Arrow type while loading from PPTX(CDX)
* [2249](https://github.com/epam/Indigo/issues/2249) Arrow Open Angle changes to Arrow Filled Triangle after saving and opening in CDX/CDXML
* [2120](https://github.com/epam/Indigo/issues/2120) Export the structure for nucleotides 2-Amino-dA does not work correctly
* [2266](https://github.com/epam/Indigo/issues/2266) Error message is wrong for missing ratio number (PEPTIDE1{(A:+C:0.1)}$$$$V2.0)
* [2300](https://github.com/epam/Indigo/issues/2300) HELM loading doesn't work in remote version
* [2293](https://github.com/epam/Indigo/issues/2293) Export IDT doesn't work for natural ambiguous monomers
* [2336](https://github.com/epam/Indigo/issues/2336) Ribose sugar doesn't allow to load IDT custom mixed bases
* [2358](https://github.com/epam/Indigo/issues/2358) Import of monomer with only one connection point (R2) doesn't work
* [2321](https://github.com/epam/Indigo/issues/2321) Export of multi-character monomer IDs inside ambiguous monomer works wrong
* [2375](https://github.com/epam/Indigo/issues/2375) Export to IDT doesn't work at all for mixed bases
* [2356](https://github.com/epam/Indigo/issues/2356) Library ambiguous peptides loaded as mixtures from FASTA
* [2357](https://github.com/epam/Indigo/issues/2357) Export to HELM doesn't work if we connect peptide TO molecule
* [2303](https://github.com/epam/Indigo/issues/2303) Import of variant monomers from Sequence doesn't work for RNA and FASTA for RNA/DNA
* [2355](https://github.com/epam/Indigo/issues/2355) Import of HELM with fractional ratio mixture values doesn't work - system expects integer
* [2421](https://github.com/epam/Indigo/issues/2421) Incorrect stereo-label placement for (E) and (Z) (indigo part)
* [2417](https://github.com/epam/Indigo/issues/2417) The layout is incorrect with retrosynthetic arrow

**Full Changelog**: https://github.com/epam/Indigo/compare/indigo-1.24.0...indigo-1.23.0
25 changes: 25 additions & 0 deletions rst/newsfeed.rst
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Indigo and Bingo 1.24.0 released
--------------------------------

*4 October 2024*

We are happy to announce that a new version 1.24.0 of Indigo toolkit and Bingo is released.

* |indigo_1_24_0_notes|

* |indigo_1_24_0_downloads|

* |bingo_1_24_0_downloads|

.. |indigo_1_24_0_notes| raw:: html

<a href="indigo/release-notes/indigo-1.24.0.html" target="_blank">Release Notes</a>

.. |indigo_1_24_0_downloads| raw:: html

<a href="download/indigo/indigo-1.24.0.html" target="_blank">Indigo Downloads</a>

.. |bingo_1_24_0_downloads| raw:: html

<a href="download/bingo/bingo-1.24.0.html" target="_blank">Bingo Downloads</a>

Ketcher 2.24.0 released
-----------------------

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