updated .gitmodules to point ww3 and icepack to erinthomas github dir… …

…ectory

initial modificaiton for wave ice coupling: …

added definitions of _w2x_ _x2w_ _i2x_ and _x2i_ for wave-ice coupling
modification currenlty commented out until ready for testing)

Added ice floe size to ix2 and x2w vars …

added wave spectrum to w2x and x2i vars
(note- variable commented out for now and array have not been filled with data)

added options to allow wave coupling with MPASSi (as a command line c… …

…ompile option)

also updated the column_waveFracture within mpas_seaice_icepack.F (still in progress)

Modifications to namelist setup - to allow wave-ice coupling and defi… …

…ne the number of wave frequencies (which is set in Wave model)

undo chnages made to add wave information to mpassi namelists.

varibles for wave coupling added to sea ice registry (icefloe size, w… …

…ave spectrum)

constants defined by WW3 needed by mpassi defined in seq_infordata_mod

commenting fsd and wave subroutine calls out - to test seq calls

commenting out mods to test.

commenting out for testing

correct compset name for DTEST- with WW3

adding init_column_fsd subroutine to mpas_seaice_icepack.F and starti… …

…ng to include FSD variables to Registry.

Also changed flag name for wave-ice stuff to "config_use_column_waves"

declare config_use_column_waves type

several typos fixed in new fsd init subroutine. …

Code compiles correctly now.

add fsd flag to column tracers

typo fix

added call to icepack_init_fsd. compile correctly

add vars for FSD to registry

starting to add fsd tracer variable infrastructure

bug fixes to fsd tracer code

bugs/typo fixes in fsd tracer codes

bug fixes/typos in tracer code

typo fixes on tracer code

update fsd tracer code, and init_fsd

update fsd initalization to better match CICE code.

final bug fixes to icepack init_fsd

updates to icepacks initalization for fsd

minor corrections to match variable names in registry.

a few minor fixes(such as typos and white spaces) …

fix to floeSizeDist time dimension in initalization subroutine.

git rebase

removing extra empy spaces

infrastructure to wave - ice coupling. for example: adding fsd and wa… …

…vespectra to seq_flds_mod.F90

Define w2x_Sw_wavespec in ww3_cpl_indices.f90

calcualte max floe diameter and add to i2x variables for wave coupling

index_w2x_Sw_wavespec is now a function of frequency - should create … …

…individual

coupling variable for wave spectrum for every frequency

fixing typos in ice_comp_mct for wave coupling variables and ensuring… …

… consistency with structure/variables within Registry.xml

smll typo fix to wav_comp_mct

fix loop to define Sw_wavespec for each freq value in wav_comp_mct.F90

add EF to coupling and output namelist for WW3

typo fix

rename WaveSpectrum to 'WaveSpectra'

add number of wave frequencies to drv_in namelist - cime requires the …

number of wave frequencies used in order to define/initalize
the coupled wave spectrum variables (wave psctrum is a coupled 3D variable)

remove empty spaces from prior commit

add wav_nfreq and loop for waave spectra feilds to seq_flds_mod.F90

full coupling of 3D wave spectra. (note code compiles but has not bee… …

…n tested at this point)

FSD and Wave Ice coupling code complet + runs. …

Note - accuracy of new code has not been completed yet.

clean up structure of wave-realted mpas-si namelist settings.

typo correction

fix n-D aray for wave spectra in MPASSI

bug fix to wave spectra definition in mpassi

typo fix

fix to wavespectra in ice comp_mct definition

adding wave vars to daily and monthly output by dafault (mpas-seaice/… …

…cime_config/buildnml)

fix to ice_ic definition in initialization of FSD.

rebase icepack_step_therm2 call

add nBioTracersLayer to steptherm2, comment out optional arguments fo… …

…r isotopes

comment about CICE vs MPASSI use of Significant wave height

minor syntax fix

wave coupling definition

define lateralHeatFlux Type

define lateralIceMeltRate

point to original icepack branch

update a few wave vars

bug fix to define wave spectra as zero in driver-mct namelist when WW… …

…3 is not used

bug fix to wavefracture call- only if wave turned on.

minor formatting updates

removing duplicate variable definitions introduced in last rebase.

bug fix to frequency calculation

fix to buildnml so wave variables only used if WW3 is in compset.

adding wave_spec_type to config options (set to 'random' if ww3 is co… …

…upled,

 and 'none' if ww3 is not used)

add config_wave_spec_type to Registery.xml

added initalization of icepack FSD/wave parameters to MPAS-SI values.

update fsd related parameters in step therm 1 call

add coupler infrastructure for remapping between MPAS-SI and WW3.

call to ice_comp_init now includes wav_c2_ice argument

add wav2ice to driver-mct/cime_config/config_component.xml

add wav2ice smap to driver-mct/cime_config/namelist_definition_drv.xml

define wave to ice remapping file for WQU225EC30to60

typo fix for wav2ice smap

fix to wav_c2_ice variable for wave to ice coupling

remove print lines for testing

add calculation for IceFloePerimeter per unit area

move location of Hs - fixes issue with all zeros being passed from co… …

…upler to mpas-si

add FloeSizePerimeter to defult output streams

calculation for floe size dist perimeter in ice_export_mct ?

fix to step therm2 for floediam (only uses this namelist constant is … …

…FSD is off)

fix to fsd perimeter calcualtion. - note the location of this calcula… …

…tion will be moved to more approprate location in near future.

fix to typo of 'config_floediam'

add floesize analysis member.

Merge branch 'WaveIceCoupling_icepackintegration' into dev_WaveIceCou… …

…pling

erinethomas authored Oct 4, 2023