Ersilia Release #24
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| # Single workflow to increment Ersilia version in pyproject.toml, | |
| # tag and push the commit to the repository, release to GitHub, PyPI, and DockerHub | |
| # This job updates _static_version.py, pyproject.toml, CITATION.cff, and codemeta.json | |
| name: Ersilia Release | |
| on: | |
| workflow_dispatch: # run manually | |
| schedule: | |
| - cron: '0 3 1 * *' # run at 3:00 AM on the first day of the month | |
| # This pipeline updates several version-related files: _static_version.py, pyproject.toml, CITATION.cff, and codemeta.json. | |
| jobs: | |
| version: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| VERSION: ${{ steps.version.outputs.VERSION }} | |
| steps: | |
| - name: Checkout persist credentials | |
| uses: actions/checkout@v4.2.2 | |
| with: | |
| persist-credentials: false # ensures use of personal token instead of GITHUB_TOKEN | |
| fetch-depth: 0 # fetches all history for tagging | |
| - name: Increment package version | |
| id: version | |
| run: | | |
| wget https://raw.githubusercontent.com/ersilia-os/ersilia/master/.github/scripts/static_version_writer.py | |
| echo "VERSION=$(python static_version_writer.py)" >> "$GITHUB_OUTPUT" | |
| rm static_version_writer.py | |
| - name: Create a release tag | |
| id: tag | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| git config --local user.email "ersilia-bot@users.noreply.github.com" | |
| git config --local user.name "ersilia-bot" | |
| git tag -a "v${{ steps.version.outputs.VERSION }}" -m "v${{ steps.version.outputs.VERSION }}" | |
| # Tagging happens implicitly; no need to push explicitly | |
| - name: Update version and release date in CITATION.cff | |
| id: update-citation | |
| env: | |
| VERSION: ${{ steps.version.outputs.VERSION }} | |
| RELEASE_DATE: ${{ github.run_started_at }} # This captures the timestamp when the workflow run was triggered/started | |
| run: | | |
| pip install PyYAML | |
| python -c " | |
| import os | |
| import yaml | |
| release_date = os.environ['RELEASE_DATE'].split('T')[0] | |
| with open('CITATION.cff', 'r') as file: | |
| citation = yaml.safe_load(file) | |
| citation['version'] = os.environ['VERSION'] | |
| citation['date-released'] = release_date | |
| with open('CITATION.cff', 'w') as file: | |
| yaml.dump(citation, file, default_flow_style=False, sort_keys=False) | |
| " | |
| - name: Update version in codemeta.json and URL | |
| id: update-codemeta | |
| env: | |
| VERSION: ${{ steps.version.outputs.VERSION }} | |
| run: | | |
| # Ensure jq is installed | |
| sudo apt-get install -y jq | |
| # Update the version and URL in codemeta.json | |
| jq --arg VERSION "$VERSION" --arg URL "https://github.com/ersilia-os/ersilia/v$VERSION" \ | |
| '.version = $VERSION | .codeRepository = $URL' codemeta.json > codemeta_tmp.json && mv codemeta_tmp.json codemeta.json | |
| - name: Commit and push changes to CITATION.cff and codemeta.json | |
| uses: actions-js/push@v1.5 | |
| with: | |
| author_name: "ersilia-bot" | |
| author_email: "ersilia-bot@users.noreply.github.com" | |
| message: "update version and release date [skip ci]" | |
| repository: "ersilia-os/${{ github.event.repository.name }}" | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| amend: true | |
| force: true | |
| branch: "master" | |
| tags: true | |
| gh-release: | |
| runs-on: ubuntu-latest | |
| needs: version | |
| env: | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4.2.2 | |
| - name: Create GitHub release | |
| id: gh_release | |
| run: | | |
| # Get the version file that we updated in the previous job | |
| wget https://raw.githubusercontent.com/ersilia-os/ersilia/master/ersilia/_static_version.py | |
| month=$(date +'%B') | |
| year=$(date +'%Y') | |
| title="$month $year" | |
| # Extract the version using sed from _static_version.py | |
| version=$(sed -n 's/.*version = "\([^"]*\)".*/\1/p' _static_version.py) | |
| gh release create "v$version" --title "$title" --generate-notes | |
| pypi-release: | |
| runs-on: ubuntu-latest | |
| needs: version | |
| steps: | |
| - uses: actions/checkout@v4.2.2 | |
| with: | |
| ref: master | |
| - name: Set up Python | |
| uses: actions/setup-python@v5.2.0 | |
| with: | |
| python-version: '3.8' | |
| - name: Python Poetry Action | |
| uses: abatilo/actions-poetry@v3.0.1 | |
| - name: Build and publish | |
| env: | |
| PYPI_USERNAME: ${{ secrets.PYPI_USERNAME }} | |
| PYPI_PASSWORD: ${{ secrets.PYPI_PASSWORD }} | |
| run: | | |
| git pull origin master | |
| poetry config -- http-basic.pypi $PYPI_USERNAME $PYPI_PASSWORD | |
| poetry --build publish |