pre commit fixes

[miquelduranfrigola]

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Description

Improved template resolver to use FastAPI as a prioritary option and deal with FastAPI versions.

Status
Done

Is this pull request related to any open issue? If yes, replace issueID below with the issue ID

Related to #1562

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This pull request introduces several changes to the ersilia package, focusing on enhancing FastAPI support, improving error handling, and adding new utility functions. Here are the most important changes:

Enhancements to FastAPI support:

• Added FASTAPI_APPROVED_PYTHON_VERSIONS to the list of approved Python versions in ersilia/default.py.
• Updated is_fastapi method in ersilia/hub/fetch/actions/template_resolver.py to include additional checks for required files and validate the Python version specified in the Dockerfile.

Error handling improvements:

• Introduced a new exception class WithToolFetchingNotWorking in ersilia/utils/exceptions_utils/fetch_exceptions.py to handle cases where fetching with specific tools fails.
• Updated _fetch_not_from_dockerhub method in ersilia/hub/fetch/fetch.py to raise WithToolFetchingNotWorking when fetching with FastAPI or BentoML fails.

Utility function additions:

• Added _less_on_file method in ersilia/hub/fetch/register/standard_example.py to read and format a CSV file for logging purposes.

[miquelduranfrigola]

@GemmaTuron I cannot merge this PR until we update the workflows of model eos3b5e. The reason for this is that it is failing due to outdated S3 data for that model.

[miquelduranfrigola]

@GemmaTuron I have updated (some) workflows of eos3b5e manually, simply to have an S3 version that is in synch with the GitHub repository.