cast min_mapq to str instead of bytes (#912)

Fix to re-enable `coverage -q/--min-mapq` option.
etal · Sep 22, 2024 · b873b86 · b873b86
1 parent 453d70c
commit b873b86
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/cnvlib/coverage.py b/cnvlib/coverage.py
@@ -216,7 +216,7 @@ def bedcov(bed_fname, bam_fname, min_mapq, fasta=None):
     # Count bases in each region; exclude low-MAPQ reads
     cmd = [bed_fname, bam_fname]
     if min_mapq and min_mapq > 0:
-        cmd.extend(["-Q", bytes(min_mapq)])
+        cmd.extend(["-Q", str(min_mapq)])
     if fasta:
         cmd.extend(["--reference", fasta])
     try: